SELECT VARIANTS FROM EXCLUDE VARIANTS FROM
INDIVIDUALS:

SNP LIST:
GROUPS:

SAVED GENE LIST:

GENE LIST:
INDIVIDUALS:

EXCLUDE SNP LIST:
EXCLUDE GROUPS:

EXCLUDE SAVED GENE LIST:

EXCLUDE GENE LIST:
SELECT YOUR DISEASES:
OMIM:
CLINICAL GENOMICS DATABASE:
HGMD:
MUTATION TYPE:
CHR:

POS:
VARIANT EFFECT FUNCTIONAL CLASS IMPACT
DBSNP BUILD:


EXCLUDE VARIANTS AT VARISNP
READ DEPTH:

QUAL:
VARIANTS PER GENE:
SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED
SHOW ONLY VARIANTS AT EXACTLY SAME POSITION BETWEEN ALL THE INDIVIDUALS SELECTED
EXCLUDE ALL VARIANTS PRESENT IN LATEST DBSNP BUILD
SHOW ONLY VARIANTS PRESENT AT HGMD

FREQUENCIES

1000 GENOMES FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES
DBSNP FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN DBSNP
ESP6500 FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN EXOME SEQUENCING PROJECT

SCORES

SIFT SCORE

EXCLUDE VARIANTS WITHOUT SIFT SCORE
POLYPHEN2 SCORE

EXCLUDE VARIANTS WITHOUT POLYPHEN SCORE
CADD

EXCLUDE VARIANTS WITHOUT CADD SCORE
MCAP

EXCLUDE VARIANTS WITHOUT M-CAP SCORE
OPEN RESULT IN A NEW WINDOW
RESET FILTER | Save Config | Save Analysis

Genes:

Genes at Omim

Genes at Clinical Genomics Database

Genes at HGMD

Summary

Number of Variants: 20
Number of Genes: 0

Export to: CSV
Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View mm170241ct 22 rs71845980
dbSNP
32340837 144.87 CG C . 1/1 5 MOTIF[MA0003.1:Ap2alpha] LOW 0.47584 0.47580 0.40809 None None None None None None None
View mm170241ct 20 rs6122141
dbSNP
61273717 529.77 G C . 1/1 19 MOTIF[MA0003.1:Ap2alpha] LOW 0.51558 0.51560 None None None None None None None
View mm170241ct 18 rs8087496
dbSNP
12308504 199.84 G A . 1/1 7 MOTIF[MA0003.1:Ap2alpha] MODIFIER 0.97484 0.97480 None None None None None None None
View mm170241ct 17 rs57311484,rs754079160,rs796727796
dbSNP
33307700 596.73 GC G . 1/1 17 MOTIF[MA0003.1:Ap2alpha] LOW 1.00000 1.00000 None None None None None None None
View mm170241ct 17 rs12945428
dbSNP
33307586 479.77 G A . 0/1 39 MOTIF[MA0003.1:Ap2alpha] LOW 0.30671 0.30670 None None None None None None None
View mm170241ct 16 rs28418438
dbSNP
15068908 172.77 C G . 0/1 21 MOTIF[MA0003.1:Ap2alpha] MODIFIER 0.42931 0.42930 None None None None None None None
View mm170241ct 15 rs66822811,rs3834548
dbSNP
48623248 1649.8 TC... T . 1/1 8 MOTIF[MA0003.1:Ap2alpha] LOW 0.53954 0.53950 None None None None None None None
View mm170241ct 15 rs3803354
dbSNP
40856989 3282.77 C T . 1/1 106 MOTIF[MA0003.1:Ap2alpha] LOW 0.85603 0.85600 0.11712 None None None None None None None
View mm170241ct 13 rs9517155
dbSNP
98629334 228.8 G C . 1/1 7 MOTIF[MA0003.1:Ap2alpha] MODIFIER 0.63858 0.63860 None None None None None None None
View mm170241ct 13 rs6650325
dbSNP
95953289 12.77 C A LowQual 1/1 1 MOTIF[MA0003.1:Ap2alpha] LOW 0.50419 0.50420 None None None None None None None
View mm170241ct 10 rs7100870
dbSNP
96122826 31.77 C T . 0/1 6 MOTIF[MA0003.1:Ap2alpha] LOW 0.08247 0.08247 None None None None None None None
View mm170241ct 9 rs3013306
dbSNP
139440845 232.77 G A . 0/1 16 MOTIF[MA0003.1:Ap2alpha] MODIFIER 0.35423 0.35420 None None None None None None None
View mm170241ct 6 rs11461877,rs869143962,rs397715970
dbSNP
36853786 418.73 A AG . 1/1 12 MOTIF[MA0003.1:Ap2alpha] LOW 1.00000 1.00000 0.00494 None None None None None None None
View mm170241ct 5 rs2303048
dbSNP
122181225 72.77 G A . 0/1 6 MOTIF[MA0003.1:Ap2alpha] LOW 0.30611 0.30610 None None None None None None None
View mm170241ct 5 rs34647
dbSNP
72112430 76.77 C G . 0/1 12 MOTIF[MA0003.1:Ap2alpha] MODIFIER 0.84325 0.84330 None None None None None None None
View mm170241ct 5 rs62356073
dbSNP
36241922 234.77 G A . 0/1 24 MOTIF[MA0003.1:Ap2alpha] MODIFIER 0.25839 0.25840 None None None None None None None
View mm170241ct 5 rs11745573
dbSNP
1801432 160.77 A G . 0/1 16 MOTIF[MA0003.1:Ap2alpha] MODIFIER 0.61542 0.61540 None None None None None None None
View mm170241ct 5 rs34372448
dbSNP
1801427 154.73 C CG . 0/1 15 MOTIF[MA0003.1:Ap2alpha] LOW 0.61542 0.61540 None None None None None None None
View mm170241ct 2 rs113344421
dbSNP
11295226 11.83 C G LowQual 1/1 1 MOTIF[MA0003.1:Ap2alpha] MODIFIER None None None None None None None
View mm170241ct 1 rs2887285
dbSNP
1242983 200.84 G A . 1/1 6 MOTIF[MA0003.1:Ap2alpha] MODIFIER 0.49381 0.49380 None None None None None None None