SELECT VARIANTS FROM EXCLUDE VARIANTS FROM
INDIVIDUALS:

SNP LIST:
GROUPS:

SAVED GENE LIST:

GENE LIST:
INDIVIDUALS:

EXCLUDE SNP LIST:
EXCLUDE GROUPS:

EXCLUDE SAVED GENE LIST:

EXCLUDE GENE LIST:
SELECT YOUR DISEASES:
OMIM:
CLINICAL GENOMICS DATABASE:
HGMD:
MUTATION TYPE:
CHR:

POS:
VARIANT EFFECT FUNCTIONAL CLASS IMPACT
DBSNP BUILD:


EXCLUDE VARIANTS AT VARISNP
READ DEPTH:

QUAL:
VARIANTS PER GENE:
SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED
SHOW ONLY VARIANTS AT EXACTLY SAME POSITION BETWEEN ALL THE INDIVIDUALS SELECTED
EXCLUDE ALL VARIANTS PRESENT IN LATEST DBSNP BUILD
SHOW ONLY VARIANTS PRESENT AT HGMD

FREQUENCIES

1000 GENOMES FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES
DBSNP FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN DBSNP
ESP6500 FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN EXOME SEQUENCING PROJECT

SCORES

SIFT SCORE

EXCLUDE VARIANTS WITHOUT SIFT SCORE
POLYPHEN2 SCORE

EXCLUDE VARIANTS WITHOUT POLYPHEN SCORE
CADD

EXCLUDE VARIANTS WITHOUT CADD SCORE
MCAP

EXCLUDE VARIANTS WITHOUT M-CAP SCORE
OPEN RESULT IN A NEW WINDOW
RESET FILTER | Save Config | Save Analysis

Genes:

Genes at Omim

Genes at Clinical Genomics Database

Genes at HGMD

Summary

Number of Variants: 17
Number of Genes: 0

Export to: CSV
Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View mm170241ct 19 rs560133510,rs61466254
dbSNP
46195051 230.73 G GC . 0/1 23 MOTIF[MA0079.2:SP1] LOW 0.20068 0.20070 None None None None None None None
View mm170241ct 18 rs1632169
dbSNP
33709762 778.77 G C . 1/1 23 MOTIF[MA0079.2:SP1] LOW 0.24541 0.24540 None None None None None None None
View mm170241ct 17 rs112877732
dbSNP
81009813 29.78 C A LowQual 0/1 3 MOTIF[MA0079.2:SP1] LOW 0.14936 0.14940 None None None None None None None
View mm170241ct 11 rs182185805
dbSNP
67236747 124.03 C A . 1/1 5 MOTIF[MA0079.2:SP1] LOW 0.00339 0.00340 None None None None None None None
View mm170241ct 10 rs2797078
dbSNP
27529549 2588.77 C A . 1/1 85 MOTIF[MA0079.2:SP1] LOW 0.67712 0.67710 0.27464 None None None None None None None
View mm170241ct 9 rs56016009
dbSNP
130693072 325.77 G A . 0/1 16 MOTIF[MA0079.2:SP1] MODIFIER 0.01438 0.01438 0.03394 None None None None None None None
View mm170241ct 8 rs111990102
dbSNP
146015401 243.77 C T . 0/1 16 MOTIF[MA0079.2:SP1] LOW 0.08367 0.08367 None None None None None None None
View mm170241ct 7 rs80040741
dbSNP
100608929 168.77 G T . 0/1 12 MOTIF[MA0079.2:SP1] MODIFIER 0.00040 0.00040 None None None None None None None
View mm170241ct 7 rs2420827
dbSNP
66147101 56.77 G A . 0/1 7 MOTIF[MA0079.2:SP1] LOW 0.33147 0.33150 None None None None None None None
View mm170241ct 6 rs62432878
dbSNP
125623274 53.77 C T . 0/1 11 MOTIF[MA0079.2:SP1] LOW 0.22005 0.22000 None None None None None None None
View mm170241ct 6 rs374669878
dbSNP
125623268 619.73 C CT... . 0/1 12 MOTIF[MA0079.2:SP1] LOW 0.33866 0.33870 None None None None None None None
View mm170241ct 6 rs2297333
dbSNP
44355423 995.77 C T . 1/1 28 MOTIF[MA0079.2:SP1] LOW 0.53534 0.53530 None None None None None None None
View mm170241ct 6 rs771342556
dbSNP
32095996 151.77 A C . 0/1 43 MOTIF[MA0079.2:SP1] MODIFIER None None None None None None None
View mm170241ct 4 rs1871048
dbSNP
71768079 389.77 C G . 1/1 15 MOTIF[MA0079.2:SP1] LOW 0.92871 0.92870 None None None None None None None
View mm170241ct 2 rs138943427,rs869172518,rs535122480,rs567378467
dbSNP
97405967 146.94 GC G . 0/1 13 MOTIF[MA0079.2:SP1] LOW 0.24980 None None None None None None None
View mm170241ct 1 rs6690695
dbSNP
224301749 12.77 C T LowQual 1/1 1 MOTIF[MA0079.2:SP1] LOW 0.45028 0.45030 None None None None None None None
View mm170241ct 1 rs2742946
dbSNP
23886073 150.9 T C . 1/1 5 MOTIF[MA0079.2:SP1] MODIFIER 0.43510 0.43510 None None None None None None None