SELECT VARIANTS FROM EXCLUDE VARIANTS FROM
INDIVIDUALS:

SNP LIST:
GROUPS:

SAVED GENE LIST:

GENE LIST:
INDIVIDUALS:

EXCLUDE SNP LIST:
EXCLUDE GROUPS:

EXCLUDE SAVED GENE LIST:

EXCLUDE GENE LIST:
SELECT YOUR DISEASES:
OMIM:
CLINICAL GENOMICS DATABASE:
HGMD:
MUTATION TYPE:
CHR:

POS:
VARIANT EFFECT FUNCTIONAL CLASS IMPACT
DBSNP BUILD:


EXCLUDE VARIANTS AT VARISNP
READ DEPTH:

QUAL:
VARIANTS PER GENE:
SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED
SHOW ONLY VARIANTS AT EXACTLY SAME POSITION BETWEEN ALL THE INDIVIDUALS SELECTED
EXCLUDE ALL VARIANTS PRESENT IN LATEST DBSNP BUILD
SHOW ONLY VARIANTS PRESENT AT HGMD

FREQUENCIES

1000 GENOMES FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES
DBSNP FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN DBSNP
ESP6500 FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN EXOME SEQUENCING PROJECT

SCORES

SIFT SCORE

EXCLUDE VARIANTS WITHOUT SIFT SCORE
POLYPHEN2 SCORE

EXCLUDE VARIANTS WITHOUT POLYPHEN SCORE
CADD

EXCLUDE VARIANTS WITHOUT CADD SCORE
MCAP

EXCLUDE VARIANTS WITHOUT M-CAP SCORE
OPEN RESULT IN A NEW WINDOW
RESET FILTER | Save Config | Save Analysis

Genes:

Genes at Omim

Genes at Clinical Genomics Database

Genes at HGMD

Summary

Number of Variants: 7
Number of Genes: 0

Export to: CSV
Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View mm170241ct 19 rs79749579,rs386388574,rs386365455
dbSNP
12662318 1436.73 G GC . 1/1 43 MOTIF[MA0114.1:HNF4A] LOW 0.99241 0.99240 None None None None None None None
View mm170241ct 17 rs74965213
dbSNP
76522837 40.77 A G . 0/1 18 MOTIF[MA0114.1:HNF4A] MODIFIER 0.09125 0.09125 0.12835 None None None None None None None
View mm170241ct 10 rs1126827
dbSNP
48438734 307.78 C T . 1/1 10 MOTIF[MA0114.1:HNF4A] MODIFIER 0.68490 0.68490 0.25000 None None None None None None None
View mm170241ct 6 rs199865018
dbSNP
167786991 143.77 G A . 0/1 25 MOTIF[MA0114.1:HNF4A] MODIFIER None None None None None None None
View mm170241ct 6 rs373735081
dbSNP
167595070 13.95 C T LowQual 0/1 10 MOTIF[MA0114.1:HNF4A] MODIFIER None None None None None None None
View mm170241ct 2 rs3731838
dbSNP
38960927 169.9 G A . 1/1 5 MOTIF[MA0114.1:HNF4A] MODIFIER 0.63898 0.63900 None None None None None None None
View mm170241ct 2 rs2303917
dbSNP
10092133 11.83 G A LowQual 1/1 1 MOTIF[MA0114.1:HNF4A] MODIFIER 0.08466 0.08466 None None None None None None None