SELECT VARIANTS FROM EXCLUDE VARIANTS FROM
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SNP LIST:
GROUPS:

SAVED GENE LIST:

GENE LIST:
INDIVIDUALS:

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CLINICAL GENOMICS DATABASE:
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MUTATION TYPE:
CHR:

POS:
VARIANT EFFECT FUNCTIONAL CLASS IMPACT
DBSNP BUILD:


EXCLUDE VARIANTS AT VARISNP
READ DEPTH:

QUAL:
VARIANTS PER GENE:
SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED
SHOW ONLY VARIANTS AT EXACTLY SAME POSITION BETWEEN ALL THE INDIVIDUALS SELECTED
EXCLUDE ALL VARIANTS PRESENT IN LATEST DBSNP BUILD
SHOW ONLY VARIANTS PRESENT AT HGMD

FREQUENCIES

1000 GENOMES FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES
DBSNP FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN DBSNP
ESP6500 FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN EXOME SEQUENCING PROJECT

SCORES

SIFT SCORE

EXCLUDE VARIANTS WITHOUT SIFT SCORE
POLYPHEN2 SCORE

EXCLUDE VARIANTS WITHOUT POLYPHEN SCORE
CADD

EXCLUDE VARIANTS WITHOUT CADD SCORE
MCAP

EXCLUDE VARIANTS WITHOUT M-CAP SCORE
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Genes at Omim

Genes at Clinical Genomics Database

Genes at HGMD

Summary

Number of Variants: 31
Number of Genes: 1

Export to: CSV

CTU2

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View mm170241ct 16 rs11278302,rs397761749
dbSNP
88780634 1887.73 AG... A . 1/1 27 MOTIF[MA0162.1:Egr1] LOW 0.77376 0.77380 None None None None None None None
Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View mm170241ct X rs1473666
dbSNP
7066051 920.77 A C . 1/1 29 MOTIF[MA0162.1:Egr1] MODIFIER 0.71417 0.71420 0.29206 None None None None None None None
View mm170241ct 22 rs62218641
dbSNP
20379008 43.74 G A . 1/1 2 MOTIF[MA0162.1:Egr1] LOW None None None None None None None
View mm170241ct 22 rs7292055
dbSNP
19974654 47.77 G A . 0/1 15 MOTIF[MA0162.1:Egr1] LOW 0.38998 0.39000 None None None None None None None
View mm170241ct 21 rs117523877
dbSNP
45553452 744.77 C G . 0/1 38 MOTIF[MA0162.1:Egr1] MODIFIER 0.00080 0.01677 None None None None None None None
View mm170241ct 20 rs55786941
dbSNP
61982514 40.77 T C . 0/1 3 MOTIF[MA0162.1:Egr1] MODIFIER None None None None None None None
View mm170241ct 20 rs13041103
dbSNP
61982496 112.03 T C . 1/1 4 MOTIF[MA0162.1:Egr1] MODIFIER 0.62360 0.62360 None None None None None None None
View mm170241ct 19 rs67621412
dbSNP
52800516 512.77 C A . 1/1 16 MOTIF[MA0162.1:Egr1] LOW 0.29173 0.29170 None None None None None None None
View mm170241ct 19 rs57122454
dbSNP
7927465 201.77 G C . 0/1 14 MOTIF[MA0162.1:Egr1] MODIFIER 0.43211 0.43210 0.24292 None None None None None None None
View mm170241ct 19 rs1004323
dbSNP
3643093 525.77 G A . 1/1 18 MOTIF[MA0162.1:Egr1] MODIFIER 0.64637 0.64640 None None None None None None None
View mm170241ct 18 rs1077511
dbSNP
77748525 12.77 A C LowQual 1/1 1 MOTIF[MA0162.1:Egr1] MODIFIER 0.79812 0.79810 None None None None None None None
View mm170241ct 17 rs139223575
dbSNP
7123240 4643.73 T TG... . 1/1 35 MOTIF[MA0162.1:Egr1] LOW 0.00679 0.46790 0.45172 None None None None None None None
View mm170241ct 17 rs77051465
dbSNP
7123240 207.77 T C . 0/1 35 MOTIF[MA0162.1:Egr1] LOW 0.00679 0.46790 0.45172 None None None None None None None
View mm170241ct 16 rs7191439
dbSNP
88780685 354.77 C T . 1/1 11 MOTIF[MA0162.1:Egr1] MODIFIER 0.01018 0.84840 0.12860 None None None None None None None
View mm170241ct 16 rs1386092
dbSNP
4675116 1164.77 G T . 1/1 32 MOTIF[MA0162.1:Egr1] LOW 0.71965 0.71960 None None None None None None None
View mm170241ct 16 rs2235632
dbSNP
1393020 361.77 G A . 1/1 14 MOTIF[MA0162.1:Egr1] LOW 0.35184 0.35180 0.40325 None None None None None None None
View mm170241ct 12 rs34187551
dbSNP
104235229 552.77 C G . 1/1 19 MOTIF[MA0162.1:Egr1] MODIFIER 0.37620 0.37620 None None None None None None None
View mm170241ct 11 rs11020197
dbSNP
92931057 120.77 C T . 0/1 15 MOTIF[MA0162.1:Egr1] LOW 0.26478 0.26480 None None None None None None None
View mm170241ct 11 rs11020196
dbSNP
92931056 122.77 G T . 0/1 15 MOTIF[MA0162.1:Egr1] LOW 0.26478 0.26480 None None None None None None None
View mm170241ct 11 . 67044546 12.77 G A LowQual 1/1 1 MOTIF[MA0162.1:Egr1] LOW None None None None None None None
View mm170241ct 10 rs34254992
dbSNP
103590680 69.77 C A . 0/1 6 MOTIF[MA0162.1:Egr1] LOW 0.06749 0.06749 None None None None None None None
View mm170241ct 9 . 139916665 11.83 C T LowQual 1/1 2 MOTIF[MA0162.1:Egr1] MODIFIER None None None None None None None
View mm170241ct 7 rs1584613
dbSNP
32530105 268.78 G C . 1/1 9 MOTIF[MA0162.1:Egr1] LOW 0.00200 0.74860 None None None None None None None
View mm170241ct 4 rs74551967
dbSNP
190862288 194.77 A G . 0/1 32 MOTIF[MA0162.1:Egr1] MODIFIER None None None None None None None
View mm170241ct 4 rs76836714
dbSNP
190862286 140.77 G T . 0/1 34 MOTIF[MA0162.1:Egr1] MODIFIER None None None None None None None
View mm170241ct 4 rs3806733
dbSNP
77069679 560.77 G T . 0/1 39 MOTIF[MA0162.1:Egr1] MODIFIER 0.16574 0.16570 None None None None None None None
View mm170241ct 3 rs968588
dbSNP
52489564 184.84 A T . 1/1 6 MOTIF[MA0162.1:Egr1] MODIFIER 0.97125 0.97120 None None None None None None None
View mm170241ct 2 rs12692386
dbSNP
9695906 169.9 A G . 1/1 6 MOTIF[MA0162.1:Egr1] MODIFIER 0.60883 0.60880 None None None None None None None
View mm170241ct 1 rs6593957
dbSNP
205600653 61.78 C T . 0/1 4 MOTIF[MA0162.1:Egr1] LOW 0.41174 0.41170 None None None None None None None
View mm170241ct X rs5955750
dbSNP
19361961 39.94 G A . 0/1 4 MOTIF[MA0162.1:Egr1] MODIFIER 0.26517 0.26520 None None None None None None None
View mm170241ct 1 rs10645094,rs199535458
dbSNP
40840270 237.73 T TGC . 0/1 14 MOTIF[MA0162.1:Egr1] LOW None None None None None None None