SELECT VARIANTS FROM EXCLUDE VARIANTS FROM
INDIVIDUALS:

SNP LIST:
GROUPS:

SAVED GENE LIST:

GENE LIST:
INDIVIDUALS:

EXCLUDE SNP LIST:
EXCLUDE GROUPS:

EXCLUDE SAVED GENE LIST:

EXCLUDE GENE LIST:
SELECT YOUR DISEASES:
OMIM:
CLINICAL GENOMICS DATABASE:
HGMD:
MUTATION TYPE:
CHR:

POS:
VARIANT EFFECT FUNCTIONAL CLASS IMPACT
DBSNP BUILD:


EXCLUDE VARIANTS AT VARISNP
READ DEPTH:

QUAL:
VARIANTS PER GENE:
SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED
SHOW ONLY VARIANTS AT EXACTLY SAME POSITION BETWEEN ALL THE INDIVIDUALS SELECTED
EXCLUDE ALL VARIANTS PRESENT IN LATEST DBSNP BUILD
SHOW ONLY VARIANTS PRESENT AT HGMD

FREQUENCIES

1000 GENOMES FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES
DBSNP FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN DBSNP
ESP6500 FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN EXOME SEQUENCING PROJECT

SCORES

SIFT SCORE

EXCLUDE VARIANTS WITHOUT SIFT SCORE
POLYPHEN2 SCORE

EXCLUDE VARIANTS WITHOUT POLYPHEN SCORE
CADD

EXCLUDE VARIANTS WITHOUT CADD SCORE
MCAP

EXCLUDE VARIANTS WITHOUT M-CAP SCORE
OPEN RESULT IN A NEW WINDOW
RESET FILTER | Save Config | Save Analysis

Genes at Omim

ABCA7,
ABCA7 {Alzheimer disease 9, susceptibility to}, 608907 (3)

Genes at Clinical Genomics Database

Genes at HGMD

Summary

Number of Variants: 10
Number of Genes: 1

Export to: CSV

ABCA7

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 23 recalibrated filtered postcgp gqfiltered 19 . 1065019 5077.69 G T PASS 0/1 60 NON_SYNONYMOUS_CODING MODERATE MISSENSE 0.10 0.43 -1.19 None None None None None None None
View 23 recalibrated filtered postcgp gqfiltered 19 . 1064194 7257.75 G A PASS 0/1 58 NON_SYNONYMOUS_CODING MODERATE MISSENSE 0.00 0.84 None None None None None None None
View 23 recalibrated filtered postcgp gqfiltered 19 . 1056422 2889.57 G A PASS 0/1 91 NON_SYNONYMOUS_CODING MODERATE MISSENSE 0.11 0.02 None None None None None None None
View 23 recalibrated filtered postcgp gqfiltered 19 . 1056228 3207.57 T C PASS 0/1 67 SYNONYMOUS_CODING LOW None None None None None None None
View 23 recalibrated filtered postcgp gqfiltered 19 . 1055192 11689.56 G A PASS 0/1 63 SYNONYMOUS_CODING LOW SILENT -0.16 None None None None None None None
View 23 recalibrated filtered postcgp gqfiltered 19 . 1052006 24777.56 C T PASS 0/1 75 NON_SYNONYMOUS_CODING MODERATE MISSENSE None None None None None None None
View 23 recalibrated filtered postcgp gqfiltered 19 . 1049306 21667.3 C A PASS 0/1 39 NON_SYNONYMOUS_CODING MODERATE MISSENSE 0.02 0.44 None None None None None None None
View 23 recalibrated filtered postcgp gqfiltered 19 . 1047162 17063.54 A G PASS 0/1 137 SYNONYMOUS_CODING LOW None None None None None None None
View 23 recalibrated filtered postcgp gqfiltered 19 . 1047003 7220.97 A G PASS 0/1 84 NON_SYNONYMOUS_CODING MODERATE MISSENSE 0.00 0.99 None None None None None None None
View 23 recalibrated filtered postcgp gqfiltered 19 . 1042810 39128.36 A G PASS 0/1 53 SYNONYMOUS_CODING LOW 0.62 None None None None None None None