SELECT VARIANTS FROM EXCLUDE VARIANTS FROM
INDIVIDUALS:

SNP LIST:
GROUPS:

SAVED GENE LIST:

GENE LIST:
INDIVIDUALS:

EXCLUDE SNP LIST:
EXCLUDE GROUPS:

EXCLUDE SAVED GENE LIST:

EXCLUDE GENE LIST:
SELECT YOUR DISEASES:
OMIM:
CLINICAL GENOMICS DATABASE:
HGMD:
MUTATION TYPE:
CHR:

POS:
VARIANT EFFECT FUNCTIONAL CLASS IMPACT
DBSNP BUILD:


EXCLUDE VARIANTS AT VARISNP
READ DEPTH:

QUAL:
VARIANTS PER GENE:
SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED
SHOW ONLY VARIANTS AT EXACTLY SAME POSITION BETWEEN ALL THE INDIVIDUALS SELECTED
EXCLUDE ALL VARIANTS PRESENT IN LATEST DBSNP BUILD
SHOW ONLY VARIANTS PRESENT AT HGMD

FREQUENCIES

1000 GENOMES FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES
DBSNP FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN DBSNP
ESP6500 FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN EXOME SEQUENCING PROJECT

SCORES

SIFT SCORE

EXCLUDE VARIANTS WITHOUT SIFT SCORE
POLYPHEN2 SCORE

EXCLUDE VARIANTS WITHOUT POLYPHEN SCORE
CADD

EXCLUDE VARIANTS WITHOUT CADD SCORE
MCAP

EXCLUDE VARIANTS WITHOUT M-CAP SCORE
OPEN RESULT IN A NEW WINDOW
RESET FILTER | Save Config | Save Analysis

Genes at Omim

Genes at Clinical Genomics Database

Genes at HGMD

Summary

Number of Variants: 7
Number of Genes: 1

Export to: CSV

FOXD4

Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 23 recalibrated filtered postcgp gqfiltered 9 rs9406416
dbSNP
118032 38386.42 G A PASS 0/1 54 SYNONYMOUS_CODING LOW SILENT 0.18351 0.18350 None None None None None None None
View 23 recalibrated filtered postcgp gqfiltered 9 rs7022056
dbSNP
117877 30012.68 C T PASS 0/1 61 SYNONYMOUS_CODING LOW SILENT 0.24141 0.24140 0.27513 None None None None None None None
View 23 recalibrated filtered postcgp gqfiltered 9 rs7031810
dbSNP
117666 35455.63 T C PASS 0/1 42 NON_SYNONYMOUS_CODING MODERATE MISSENSE 0.18311 0.18310 0.00 1.00 4.77 None None None None None None None
View 23 recalibrated filtered postcgp gqfiltered 9 rs138098441
dbSNP
117637 333.63 G A PASS 0/1 57 SYNONYMOUS_CODING LOW SILENT 0.02376 0.02376 0.02271 None None None None None None None
View 23 recalibrated filtered postcgp gqfiltered 9 rs2757973
dbSNP
117371 14359.39 C G,* VQSRTrancheSNP99.90to100.00 0/1 14 NON_SYNONYMOUS_CODING MODERATE MISSENSE 0.60543 0.60540 1.00 0.00 -2.22 None None None None None None None
View 23 recalibrated filtered postcgp gqfiltered 9 rs754377138
dbSNP
117370 11197.49 GCC G PASS 0/1 14 FRAME_SHIFT HIGH None None None None None None None
View 23 recalibrated filtered postcgp gqfiltered 9 rs773530430
dbSNP
117366 11621.41 C CCG PASS 0/1 14 FRAME_SHIFT HIGH None None None None None None None