SELECT VARIANTS FROM EXCLUDE VARIANTS FROM
INDIVIDUALS:

SNP LIST:
GROUPS:

SAVED GENE LIST:

GENE LIST:
INDIVIDUALS:

EXCLUDE SNP LIST:
EXCLUDE GROUPS:

EXCLUDE SAVED GENE LIST:

EXCLUDE GENE LIST:
SELECT YOUR DISEASES:
OMIM:
CLINICAL GENOMICS DATABASE:
HGMD:
MUTATION TYPE:
CHR:

POS:
VARIANT EFFECT FUNCTIONAL CLASS IMPACT
DBSNP BUILD:


EXCLUDE VARIANTS AT VARISNP
READ DEPTH:

QUAL:
VARIANTS PER GENE:
SHOW ONLY VARIANTS PRESENT IN COMMON GENES BETWEEN ALL THE INDIVIDUALS SELECTED
SHOW ONLY VARIANTS AT EXACTLY SAME POSITION BETWEEN ALL THE INDIVIDUALS SELECTED
EXCLUDE ALL VARIANTS PRESENT IN LATEST DBSNP BUILD
SHOW ONLY VARIANTS PRESENT AT HGMD

FREQUENCIES

1000 GENOMES FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN 1000GENOMES
DBSNP FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN DBSNP
ESP6500 FREQUENCY

EXCLUDE ALL VARIANTS PRESENT IN EXOME SEQUENCING PROJECT

SCORES

SIFT SCORE

EXCLUDE VARIANTS WITHOUT SIFT SCORE
POLYPHEN2 SCORE

EXCLUDE VARIANTS WITHOUT POLYPHEN SCORE
CADD

EXCLUDE VARIANTS WITHOUT CADD SCORE
MCAP

EXCLUDE VARIANTS WITHOUT M-CAP SCORE
OPEN RESULT IN A NEW WINDOW
RESET FILTER | Save Config | Save Analysis

Genes:

Genes at Omim

Genes at Clinical Genomics Database

Genes at HGMD

Summary

Number of Variants: 10
Number of Genes: 0

Export to: CSV
Omim - GeneCards - NCBI
Options Individual Chr
RsId
Pos
Qual
Ref
Alt
Filter Gen
Read Depth Effect Impact Func Class 1kgenomes dbSNP ESP6500 Sift PP2 CADD M-CAP CLINVAR HI Score
View 23 recalibrated filtered postcgp gqfiltered 21 . 44591702 47639.84 G T PASS 0/1 114 MOTIF[MA0114.1:HNF4A] MODIFIER 7.87 None None None None None None None
View 23 recalibrated filtered postcgp gqfiltered 19 . 1383650 841.75 G T PASS 0/1 24 MOTIF[MA0114.1:HNF4A] MODIFIER None None None None None None None
View 23 recalibrated filtered postcgp gqfiltered 17 . 1800249 103357.84 G C PASS 0/1 58 MOTIF[MA0114.1:HNF4A] MODIFIER 3.67 None None None None None None None
View 23 recalibrated filtered postcgp gqfiltered 16 . 54114716 277.28 C T PASS 0/1 8 MOTIF[MA0114.1:HNF4A] MODIFIER None None None None None None None
View 23 recalibrated filtered postcgp gqfiltered 16 . 50325990 17916.73 G A PASS 0/1 24 MOTIF[MA0114.1:HNF4A] LOW None None None None None None None
View 23 recalibrated filtered postcgp gqfiltered 7 . 101034275 70615.29 A C PASS 0/1 443 MOTIF[MA0114.1:HNF4A] MODIFIER None None None None None None None
View 23 recalibrated filtered postcgp gqfiltered 3 . 187728423 7747.84 C T PASS 0/1 71 MOTIF[MA0114.1:HNF4A] MODIFIER 0.37 None None None None None None None
View 23 recalibrated filtered postcgp gqfiltered 2 . 241816029 16.65 A C PASS 0/1 6 MOTIF[MA0114.1:HNF4A] MODIFIER None None None None None None None
View 23 recalibrated filtered postcgp gqfiltered 2 . 97167816 1712.61 C T PASS 0/1 6 MOTIF[MA0114.1:HNF4A] LOW None None None None None None None
View 23 recalibrated filtered postcgp gqfiltered 1 . 15684510 478.31 G GGGC PASS 0/1 38 MOTIF[MA0114.1:HNF4A] LOW None None None None None None None