Name: d16_0547
Variants: 408578
Novel Variants: 31650 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 408578 364 1/2 138384 0/1 269830 1/1
Total Gene-associated SNVs 408578 364 1/2 138384 0/1 269830 1/1

Type Total Variants
49
CODON_CHANGE_PLUS_CODON_DELETION136
CODON_CHANGE_PLUS_CODON_INSERTION94
CODON_DELETION52
CODON_DELETION+SPLICE_SITE_REGION2
CODON_INSERTION67
CODON_INSERTION+SPLICE_SITE_REGION1
FRAME_SHIFT292
FRAME_SHIFT+SPLICE_SITE_REGION42
FRAME_SHIFT+START_LOST5
FRAME_SHIFT+STOP_GAINED10
FRAME_SHIFT+STOP_LOST5
MOTIF_DELETED7
MOTIF[MA0003.1:Ap2alpha]27
MOTIF[MA0014.1:Pax5]6
MOTIF[MA0016.1:RXRA]4
MOTIF[MA0024.1:E2F1]6
MOTIF[MA0035.1:Gata1]1
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]5
MOTIF[MA0047.1:FOXA2]4
MOTIF[MA0047.2:FOXA2]7
MOTIF[MA0058.1:Max]26
MOTIF[MA0059.1:Cmyc]10
MOTIF[MA0062.1:Gabp]10
MOTIF[MA0062.2:Gabp]34
MOTIF[MA0065.1:PPARG]4
MOTIF[MA0079.1:SP1]12
MOTIF[MA0079.2:SP1]40
MOTIF[MA0080.1:PU1]4
MOTIF[MA0080.2:PU1]3
MOTIF[MA0083.1:Srf]2
MOTIF[MA0093.1:USF1]32
MOTIF[MA0095.1:Yy1]12
MOTIF[MA0099.1:Cfos]8
MOTIF[MA0099.2:AP1]4
MOTIF[MA0105.1:NFKB]1
MOTIF[MA0114.1:HNF4A]14
MOTIF[MA0138.1:Nrsf]2
MOTIF[MA0138.2:Nrsf]14
MOTIF[MA0139.1:CTCF]197
MOTIF[MA0140.1:Tal1]3
MOTIF[MA0147.1:Cmyc]21
MOTIF[MA0148.1:FOXA1]3
MOTIF[MA0154.1:EBF]9
MOTIF[MA0159.1:RXR]2
MOTIF[MA0162.1:Egr1]49
NON_SYNONYMOUS_CODING11909
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION253
PROTEIN_INTERACTION_LOCUS36
SPLICE_SITE_REGION44
SPLICE_SITE_REGION+SYNONYMOUS_CODING258
START_GAINED331
START_LOST16
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED127
STOP_GAINED+CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST29
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING12447
SYNONYMOUS_STOP12
TRANSCRIPT4
None0

Type Total Variants
1756
MISSENSE12209
NONSENSE128
SILENT12717
None0

Type Total Variants
HIGH567
LOW13348
MODERATE12514
MODIFIER381
None0

Type Total Variants
.308668
LowQual99910

Quality Value
Min10.15
Average387.23321992405
Max62655.77

Read Depth Value
Min0
Average20.694112262530044
Max3994

Type Total Variants
None0
32
25
5|51
2|21

Chromossome Total Variants
136572
1020219
1120836
1220266
1311484
1413940
1513352
1617337
1718084
189247
1919306
230489
2010588
217121
228727
323468
422219
519490
619813
723803
816812
917935
M49
X5780
Y1641