Name: 12345
Variants: 314753
Novel Variants: 15151 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 314753 131663 0/1 182175 1/1 915 1/0
Total Gene-associated SNVs 314753 131663 0/1 182175 1/1 915 1/0

Type Total Variants
28
CODON_CHANGE_PLUS_CODON_DELETION158
CODON_CHANGE_PLUS_CODON_INSERTION111
CODON_DELETION52
CODON_INSERTION88
CODON_INSERTION+SPLICE_SITE_REGION2
FRAME_SHIFT331
FRAME_SHIFT+SPLICE_SITE_REGION44
FRAME_SHIFT+START_LOST3
FRAME_SHIFT+STOP_GAINED7
FRAME_SHIFT+STOP_LOST3
MOTIF_DELETED12
MOTIF[MA0003.1:Ap2alpha]40
MOTIF[MA0014.1:Pax5]14
MOTIF[MA0016.1:RXRA]5
MOTIF[MA0024.1:E2F1]12
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]2
MOTIF[MA0047.2:FOXA2]3
MOTIF[MA0058.1:Max]28
MOTIF[MA0059.1:Cmyc]9
MOTIF[MA0062.1:Gabp]12
MOTIF[MA0062.2:Gabp]38
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]10
MOTIF[MA0079.2:SP1]34
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]4
MOTIF[MA0083.1:Srf]2
MOTIF[MA0093.1:USF1]13
MOTIF[MA0095.1:Yy1]14
MOTIF[MA0099.1:Cfos]3
MOTIF[MA0099.2:AP1]3
MOTIF[MA0114.1:HNF4A]13
MOTIF[MA0115.1:RNR1H2]1
MOTIF[MA0138.1:Nrsf]3
MOTIF[MA0138.2:Nrsf]8
MOTIF[MA0139.1:CTCF]151
MOTIF[MA0140.1:Tal1]2
MOTIF[MA0147.1:Cmyc]15
MOTIF[MA0148.1:FOXA1]2
MOTIF[MA0154.1:EBF]9
MOTIF[MA0159.1:RXR]3
MOTIF[MA0162.1:Egr1]62
NON_SYNONYMOUS_CODING11769
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION244
NON_SYNONYMOUS_START1
PROTEIN_INTERACTION_LOCUS38
SPLICE_SITE_REGION105
SPLICE_SITE_REGION+SYNONYMOUS_CODING241
START_GAINED459
START_LOST11
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED118
STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED+CODON_INSERTION2
STOP_GAINED+SPLICE_SITE_REGION3
STOP_LOST29
STOP_LOST+SPLICE_SITE_REGION1
SYNONYMOUS_CODING12187
SYNONYMOUS_STOP14
TRANSCRIPT4
None0

Type Total Variants
1968
MISSENSE12055
NONSENSE121
SILENT12442
None0

Type Total Variants
HIGH592
LOW13247
MODERATE12424
MODIFIER323
None0

Type Total Variants
LowCoverage106738
LowCoverage;LowQual36222
LowCoverage;LowQual;SnpCluster1307
LowCoverage;SnpCluster6905
LowQD868
LowQD;LowQual349
LowQD;LowQual;SnpCluster91
LowQD;SnpCluster289
LowQual1309
LowQual;SnpCluster175
PASS153444
SnpCluster7056

Quality Value
Min30.0
Average851.804789123071
Max169440.0

Read Depth Value
Min0
Average46.39890962119503
Max8667

Type Total Variants
None0
32
21
5|51
52

Chromossome Total Variants
129193
1015428
1116169
1216175
137477
1410599
1510155
1613208
1714693
186133
1914785
223363
208107
216606
227158
317782
415878
513701
618014
717484
811541
913318
M28
X5091
Y2667