Name: 1154
Variants: 427059
Novel Variants: 20813 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 427059 117818 0/1 308782 1/1 459 1/0
Total Gene-associated SNVs 427059 117818 0/1 308782 1/1 459 1/0

Type Total Variants
53
CODON_CHANGE_PLUS_CODON_DELETION113
CODON_CHANGE_PLUS_CODON_DELETION+SPLICE_SITE_REGION1
CODON_CHANGE_PLUS_CODON_INSERTION68
CODON_DELETION64
CODON_DELETION+SPLICE_SITE_REGION1
CODON_INSERTION71
CODON_INSERTION+SPLICE_SITE_REGION1
FRAME_SHIFT238
FRAME_SHIFT+SPLICE_SITE_REGION26
FRAME_SHIFT+START_LOST3
FRAME_SHIFT+STOP_GAINED3
FRAME_SHIFT+STOP_LOST3
MOTIF_DELETED3
MOTIF[MA0003.1:Ap2alpha]44
MOTIF[MA0014.1:Pax5]11
MOTIF[MA0016.1:RXRA]5
MOTIF[MA0024.1:E2F1]7
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]3
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0047.2:FOXA2]3
MOTIF[MA0058.1:Max]29
MOTIF[MA0059.1:Cmyc]11
MOTIF[MA0062.1:Gabp]13
MOTIF[MA0062.2:Gabp]41
MOTIF[MA0065.1:PPARG]2
MOTIF[MA0065.2:PPARG]3
MOTIF[MA0074.1:RXRA]1
MOTIF[MA0079.1:SP1]16
MOTIF[MA0079.2:SP1]41
MOTIF[MA0080.1:PU1]6
MOTIF[MA0080.2:PU1]10
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]12
MOTIF[MA0095.1:Yy1]13
MOTIF[MA0099.1:Cfos]4
MOTIF[MA0099.2:AP1]5
MOTIF[MA0105.1:NFKB]1
MOTIF[MA0114.1:HNF4A]12
MOTIF[MA0138.2:Nrsf]21
MOTIF[MA0139.1:CTCF]201
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]20
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]7
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]73
MOTIF[MA0239.1:Pax5]1
NON_SYNONYMOUS_CODING7345
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION142
NON_SYNONYMOUS_START3
PROTEIN_INTERACTION_LOCUS40
SPLICE_SITE_REGION65
SPLICE_SITE_REGION+SYNONYMOUS_CODING154
START_GAINED319
START_LOST6
STOP_GAINED77
STOP_GAINED+CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION2
STOP_LOST14
SYNONYMOUS_CODING8008
SYNONYMOUS_STOP6
TRANSCRIPT6
None0

Type Total Variants
1701
MISSENSE7510
NONSENSE79
SILENT8168
None0

Type Total Variants
HIGH413
LOW8835
MODERATE7806
MODIFIER404
None0

Type Total Variants
LowCoverage188311
LowCoverage;LowQual126769
LowCoverage;LowQual;SnpCluster2505
LowCoverage;SnpCluster12351
LowQD662
LowQD;LowQual374
LowQD;LowQual;SnpCluster105
LowQD;SnpCluster243
LowQual1504
LowQual;SnpCluster404
PASS85664
SnpCluster8167

Quality Value
Min30.0
Average315.628764994369
Max257092.0

Read Depth Value
Min0
Average16.819486300487753
Max5745

Type Total Variants
None0
32
23
5|51
2|22

Chromossome Total Variants
135790
1020867
1120054
1219018
1312972
1411831
1512584
1618320
1715859
1810161
1914103
232646
2010894
2111776
227243
326233
427249
520292
626689
723066
817857
919592
M53
X6307
Y5603