Name: 1224
Variants: 141844
Novel Variants: 7494 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 141844 59749 0/1 81730 1/1 365 1/0
Total Gene-associated SNVs 141844 59749 0/1 81730 1/1 365 1/0

Type Total Variants
46
CODON_CHANGE_PLUS_CODON_DELETION111
CODON_CHANGE_PLUS_CODON_INSERTION66
CODON_DELETION33
CODON_DELETION+SPLICE_SITE_REGION1
CODON_INSERTION56
FRAME_SHIFT177
FRAME_SHIFT+SPLICE_SITE_REGION24
FRAME_SHIFT+START_LOST3
FRAME_SHIFT+STOP_GAINED4
FRAME_SHIFT+STOP_LOST3
MOTIF_DELETED3
MOTIF[MA0003.1:Ap2alpha]22
MOTIF[MA0014.1:Pax5]13
MOTIF[MA0016.1:RXRA]3
MOTIF[MA0024.1:E2F1]8
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0058.1:Max]18
MOTIF[MA0059.1:Cmyc]5
MOTIF[MA0062.1:Gabp]4
MOTIF[MA0062.2:Gabp]29
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]10
MOTIF[MA0079.2:SP1]31
MOTIF[MA0080.1:PU1]3
MOTIF[MA0080.2:PU1]3
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]8
MOTIF[MA0095.1:Yy1]8
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0099.2:AP1]5
MOTIF[MA0114.1:HNF4A]5
MOTIF[MA0115.1:RNR1H2]1
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]9
MOTIF[MA0139.1:CTCF]104
MOTIF[MA0147.1:Cmyc]13
MOTIF[MA0154.1:EBF]4
MOTIF[MA0162.1:Egr1]41
MOTIF[MA0239.1:Pax5]1
NON_SYNONYMOUS_CODING6483
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION142
NON_SYNONYMOUS_START2
PROTEIN_INTERACTION_LOCUS29
SPLICE_SITE_REGION65
SPLICE_SITE_REGION+SYNONYMOUS_CODING153
START_GAINED268
START_LOST8
STOP_GAINED73
STOP_GAINED+CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION2
STOP_LOST11
SYNONYMOUS_CODING6991
SYNONYMOUS_STOP4
TRANSCRIPT5
None0

Type Total Variants
1249
MISSENSE6646
NONSENSE75
SILENT7148
None0

Type Total Variants
HIGH335
LOW7652
MODERATE6892
MODIFIER239
None0

Type Total Variants
LowCoverage41269
LowCoverage;LowQual16261
LowCoverage;LowQual;SnpCluster349
LowCoverage;SnpCluster3580
LowQD676
LowQD;LowQual296
LowQD;LowQual;SnpCluster50
LowQD;SnpCluster259
LowQual797
LowQual;SnpCluster78
PASS73558
SnpCluster4671

Quality Value
Min30.0
Average774.47868150879
Max90409.8

Read Depth Value
Min0
Average43.74502975099405
Max6411

Type Total Variants
None0
33
22
5|51
2|21

Chromossome Total Variants
113007
106860
116449
126720
133280
144090
154405
166317
176485
182875
197315
210735
203338
212834
223296
37543
47016
55919
69539
77688
84767
96370
M46
X3513
Y1437