Name: mm190402ijf
Variants: 159959
Novel Variants: 4460 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 159959 492 1/2 100110 0/1 59357 1/1
Total Gene-associated SNVs 159959 492 1/2 100110 0/1 59357 1/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION123
CODON_CHANGE_PLUS_CODON_DELETION+SPLICE_SITE_REGION1
CODON_CHANGE_PLUS_CODON_INSERTION78
CODON_DELETION54
CODON_DELETION+SPLICE_SITE_REGION2
CODON_INSERTION78
CODON_INSERTION+SPLICE_SITE_REGION1
FRAME_SHIFT187
FRAME_SHIFT+SPLICE_SITE_REGION42
FRAME_SHIFT+START_LOST3
FRAME_SHIFT+START_LOST+SPLICE_SITE_REGION1
FRAME_SHIFT+STOP_GAINED7
FRAME_SHIFT+STOP_LOST2
MOTIF_DELETED1
MOTIF[MA0003.1:Ap2alpha]30
MOTIF[MA0014.1:Pax5]5
MOTIF[MA0016.1:RXRA]6
MOTIF[MA0024.1:E2F1]7
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0058.1:Max]17
MOTIF[MA0059.1:Cmyc]5
MOTIF[MA0062.1:Gabp]12
MOTIF[MA0062.2:Gabp]31
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]8
MOTIF[MA0079.2:SP1]24
MOTIF[MA0080.1:PU1]3
MOTIF[MA0080.2:PU1]4
MOTIF[MA0083.1:Srf]2
MOTIF[MA0093.1:USF1]8
MOTIF[MA0095.1:Yy1]10
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]8
MOTIF[MA0115.1:RNR1H2]1
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]6
MOTIF[MA0139.1:CTCF]114
MOTIF[MA0140.1:Tal1]2
MOTIF[MA0147.1:Cmyc]19
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]4
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]40
NON_SYNONYMOUS_CODING13807
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION282
NON_SYNONYMOUS_START2
PROTEIN_INTERACTION_LOCUS41
SPLICE_SITE_REGION45
SPLICE_SITE_REGION+SYNONYMOUS_CODING280
SPLICE_SITE_REGION+SYNONYMOUS_STOP1
START_GAINED377
START_LOST11
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED140
STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION4
STOP_LOST33
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING13248
SYNONYMOUS_STOP15
TRANSCRIPT2
None0

Type Total Variants
1420
MISSENSE14138
NONSENSE144
SILENT13544
None0

Type Total Variants
HIGH476
LOW14135
MODERATE14426
MODIFIER209
None0

Type Total Variants
.152702
LowQual7257

Quality Value
Min10.17
Average1029.14978400796
Max65449.29

Read Depth Value
Min1
Average71.47375890071831
Max6873

Type Total Variants
None0
32
24
2|22

Chromossome Total Variants
115558
106870
119371
127967
133014
145576
155824
167584
178818
182803
1910802
211273
203854
212450
224178
38873
46311
56534
69331
78575
85389
96849
X1875
Y280