Name: mm160629ys
Variants: 137516
Novel Variants: 1788 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 137516 426 1/2 82747 0/1 54343 1/1
Total Gene-associated SNVs 137516 426 1/2 82747 0/1 54343 1/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION101
CODON_CHANGE_PLUS_CODON_DELETION+SPLICE_SITE_REGION1
CODON_CHANGE_PLUS_CODON_INSERTION69
CODON_DELETION55
CODON_INSERTION60
CODON_INSERTION+SPLICE_SITE_REGION1
FRAME_SHIFT155
FRAME_SHIFT+SPLICE_SITE_REGION42
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+STOP_GAINED2
FRAME_SHIFT+STOP_LOST2
MOTIF_DELETED2
MOTIF[MA0003.1:Ap2alpha]23
MOTIF[MA0014.1:Pax5]3
MOTIF[MA0016.1:RXRA]6
MOTIF[MA0024.1:E2F1]3
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]2
MOTIF[MA0058.1:Max]13
MOTIF[MA0059.1:Cmyc]6
MOTIF[MA0062.1:Gabp]9
MOTIF[MA0062.2:Gabp]27
MOTIF[MA0065.1:PPARG]2
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]6
MOTIF[MA0079.2:SP1]17
MOTIF[MA0080.1:PU1]4
MOTIF[MA0080.2:PU1]7
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]5
MOTIF[MA0095.1:Yy1]7
MOTIF[MA0099.1:Cfos]2
MOTIF[MA0099.2:AP1]2
MOTIF[MA0114.1:HNF4A]8
MOTIF[MA0138.1:Nrsf]2
MOTIF[MA0138.2:Nrsf]7
MOTIF[MA0139.1:CTCF]88
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]12
MOTIF[MA0154.1:EBF]4
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]28
NON_SYNONYMOUS_CODING11599
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION255
NON_SYNONYMOUS_START2
PROTEIN_INTERACTION_LOCUS36
SPLICE_SITE_REGION36
SPLICE_SITE_REGION+SYNONYMOUS_CODING281
START_GAINED343
START_LOST14
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED101
STOP_GAINED+SPLICE_SITE_REGION2
STOP_LOST25
STOP_LOST+SPLICE_SITE_REGION4
SYNONYMOUS_CODING12162
SYNONYMOUS_STOP12
TRANSCRIPT1
None0

Type Total Variants
1209
MISSENSE11899
NONSENSE103
SILENT12455
None0

Type Total Variants
HIGH388
LOW12967
MODERATE12141
MODIFIER170
None0

Type Total Variants
.133069
LowQual4447

Quality Value
Min10.2
Average1035.07301303081
Max65422.19

Read Depth Value
Min1
Average54.36357223886675
Max4118

Type Total Variants
None0
32
2|21
24

Chromossome Total Variants
112516
105910
118235
127465
132740
144674
154637
166717
177314
182038
198696
210004
203738
212209
223213
37402
45486
55912
68710
77215
84915
95689
X1993
Y88