Name: mm151014ab
Variants: 95607
Novel Variants: 2063 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 95607 58357 0/1 37250 1/1
Total Gene-associated SNVs 95607 58357 0/1 37250 1/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION100
CODON_CHANGE_PLUS_CODON_INSERTION64
CODON_DELETION45
CODON_INSERTION41
CODON_INSERTION+SPLICE_SITE_REGION1
FRAME_SHIFT189
FRAME_SHIFT+SPLICE_SITE_REGION39
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+STOP_GAINED4
FRAME_SHIFT+STOP_LOST3
MOTIF[MA0003.1:Ap2alpha]16
MOTIF[MA0014.1:Pax5]2
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]2
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]2
MOTIF[MA0058.1:Max]12
MOTIF[MA0059.1:Cmyc]5
MOTIF[MA0062.1:Gabp]3
MOTIF[MA0062.2:Gabp]29
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0079.1:SP1]2
MOTIF[MA0079.2:SP1]12
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]3
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]1
MOTIF[MA0095.1:Yy1]9
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]5
MOTIF[MA0138.2:Nrsf]3
MOTIF[MA0139.1:CTCF]53
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]7
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]21
NON_SYNONYMOUS_CODING11074
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION227
PROTEIN_INTERACTION_LOCUS39
SPLICE_SITE_REGION32
SPLICE_SITE_REGION+SYNONYMOUS_CODING238
START_GAINED219
START_LOST10
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED97
STOP_GAINED+CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST27
STOP_LOST+SPLICE_SITE_REGION4
SYNONYMOUS_CODING11476
SYNONYMOUS_STOP11
TRANSCRIPT1
None0

Type Total Variants
981
MISSENSE11342
NONSENSE98
SILENT11725
None0

Type Total Variants
HIGH419
LOW12068
MODERATE11552
MODIFIER107
None0

Type Total Variants
GATKStandard1446
GATKStandard;LowQual48
GATKStandard;LowQual;repeat17
GATKStandard;repeat332
LowQual3395
PASS80232
repeat851
TruthSensitivityTranche99.00to99.905944
TruthSensitivityTranche99.90to100.003342

Quality Value
Min10.02
Average968.219012101635
Max21855.95

Read Depth Value
Min0
Average52.769431108600834
Max250

Type Total Variants
None0
32
22
5|51
2|22

Chromossome Total Variants
19356
104133
116180
125384
131830
143238
153139
164500
175151
181577
195853
26569
202345
211424
222103
35607
44060
54078
65883
74685
83447
93975
X1059
Y31