Name: mm160246mm
Variants: 46308
Novel Variants: 296 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 46308 59 1/2 29510 0/1 16739 1/1
Total Gene-associated SNVs 46308 59 1/2 29510 0/1 16739 1/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION64
CODON_CHANGE_PLUS_CODON_INSERTION43
CODON_DELETION29
CODON_INSERTION45
CODON_INSERTION+SPLICE_SITE_REGION1
FRAME_SHIFT122
FRAME_SHIFT+SPLICE_SITE_REGION37
FRAME_SHIFT+START_LOST3
FRAME_SHIFT+STOP_GAINED3
FRAME_SHIFT+STOP_LOST3
MOTIF[MA0003.1:Ap2alpha]4
MOTIF[MA0014.1:Pax5]2
MOTIF[MA0024.1:E2F1]3
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0058.1:Max]4
MOTIF[MA0062.1:Gabp]1
MOTIF[MA0062.2:Gabp]14
MOTIF[MA0079.1:SP1]2
MOTIF[MA0079.2:SP1]4
MOTIF[MA0080.2:PU1]1
MOTIF[MA0095.1:Yy1]5
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0114.1:HNF4A]1
MOTIF[MA0138.2:Nrsf]1
MOTIF[MA0139.1:CTCF]23
MOTIF[MA0147.1:Cmyc]1
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0162.1:Egr1]3
NON_SYNONYMOUS_CODING9724
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION187
NON_SYNONYMOUS_START1
PROTEIN_INTERACTION_LOCUS46
SPLICE_SITE_REGION14
SPLICE_SITE_REGION+SYNONYMOUS_CODING198
START_GAINED98
START_LOST8
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
START_LOST+CODON_INSERTION1
STOP_GAINED89
STOP_GAINED+SPLICE_SITE_REGION3
STOP_LOST21
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING10378
SYNONYMOUS_STOP5
None0

Type Total Variants
582
MISSENSE9944
NONSENSE92
SILENT10581
None0

Type Total Variants
HIGH340
LOW10731
MODERATE10093
MODIFIER35
None0

Type Total Variants
.45964
LowQual344

Quality Value
Min10.2
Average1301.46387211816
Max65422.19

Read Depth Value
Min1
Average69.83341971149693
Max1000

Type Total Variants
None0
31
22

Chromossome Total Variants
14379
101901
113191
122302
13841
141623
151436
162130
172792
18730
193066
23188
201185
21647
221160
32499
41795
51966
62668
72420
81690
91909
X742
Y48