Name: ep08-pa_s1
Variants: 34697
Novel Variants: 642 (Not in latest DbSNP Build)
Type | Total Variants |
---|---|
CODON_CHANGE_PLUS_CODON_DELETION | 124 |
CODON_CHANGE_PLUS_CODON_INSERTION | 81 |
CODON_DELETION | 53 |
CODON_INSERTION | 68 |
FRAME_SHIFT | 138 |
FRAME_SHIFT+SPLICE_SITE_REGION | 39 |
FRAME_SHIFT+START_LOST | 3 |
FRAME_SHIFT+STOP_GAINED | 2 |
FRAME_SHIFT+STOP_LOST | 2 |
MOTIF[MA0003.1:Ap2alpha] | 5 |
MOTIF[MA0014.1:Pax5] | 2 |
MOTIF[MA0024.1:E2F1] | 2 |
MOTIF[MA0035.1:Gata1] | 1 |
MOTIF[MA0058.1:Max] | 4 |
MOTIF[MA0062.2:Gabp] | 2 |
MOTIF[MA0079.1:SP1] | 2 |
MOTIF[MA0079.2:SP1] | 2 |
MOTIF[MA0093.1:USF1] | 2 |
MOTIF[MA0095.1:Yy1] | 4 |
MOTIF[MA0114.1:HNF4A] | 3 |
MOTIF[MA0139.1:CTCF] | 8 |
MOTIF[MA0147.1:Cmyc] | 2 |
MOTIF[MA0154.1:EBF] | 1 |
MOTIF[MA0162.1:Egr1] | 4 |
NON_SYNONYMOUS_CODING | 12177 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 249 |
PROTEIN_INTERACTION_LOCUS | 44 |
SPLICE_SITE_REGION | 13 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 263 |
START_GAINED | 51 |
START_LOST | 14 |
START_LOST+SPLICE_SITE_REGION | 1 |
STOP_GAINED | 125 |
STOP_GAINED+SPLICE_SITE_REGION | 1 |
STOP_LOST | 22 |
STOP_LOST+SPLICE_SITE_REGION | 4 |
SYNONYMOUS_CODING | 12530 |
SYNONYMOUS_STOP | 6 |
None | 0 |
Type | Total Variants |
---|---|
LowGQ;LowGQX | 88 |
LowGQ;LowGQX;LowMQ | 13 |
LowGQ;LowGQX;LowMQ;LowQD | 9 |
LowGQ;LowGQX;LowMQ;LowQD;SB | 52 |
LowGQ;LowGQX;LowMQ;SB | 23 |
LowGQ;LowGQX;LowQD;SB | 1 |
LowGQ;LowGQX;SB | 84 |
LowGQX | 3 |
LowGQX;LowMQ;LowQD | 5 |
LowGQX;LowMQ;LowQD;SB | 41 |
LowGQX;LowQD | 19 |
LowGQX;LowQD;SB | 124 |
LowGQX;SB | 5 |
LowMQ | 102 |
LowMQ;LowQD | 52 |
LowMQ;LowQD;SB | 157 |
LowMQ;SB | 68 |
LowQD | 703 |
LowQD;SB | 823 |
PASS | 31975 |
SB | 350 |
Quality | Value |
---|---|
Min | 3.01 |
Average | 3513.85635242239 |
Max | 78666.04 |
Read Depth | Value |
---|---|
Min | 1 |
Average | 232.0440095685506 |
Max | 5000 |