Name: mm170241ct
Variants: 133757
Novel Variants: 1931 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 133757 278 1/2 80774 0/1 52705 1/1
Total Gene-associated SNVs 133757 278 1/2 80774 0/1 52705 1/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION90
CODON_CHANGE_PLUS_CODON_INSERTION49
CODON_DELETION35
CODON_DELETION+SPLICE_SITE_REGION1
CODON_INSERTION49
CODON_INSERTION+SPLICE_SITE_REGION1
FRAME_SHIFT148
FRAME_SHIFT+SPLICE_SITE_REGION40
FRAME_SHIFT+START_LOST3
FRAME_SHIFT+STOP_GAINED2
FRAME_SHIFT+STOP_LOST4
MOTIF_DELETED1
MOTIF[MA0003.1:Ap2alpha]20
MOTIF[MA0014.1:Pax5]2
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]5
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0058.1:Max]17
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.1:Gabp]6
MOTIF[MA0062.2:Gabp]28
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]8
MOTIF[MA0079.2:SP1]17
MOTIF[MA0080.1:PU1]4
MOTIF[MA0080.2:PU1]2
MOTIF[MA0083.1:Srf]2
MOTIF[MA0093.1:USF1]2
MOTIF[MA0095.1:Yy1]10
MOTIF[MA0099.2:AP1]2
MOTIF[MA0114.1:HNF4A]7
MOTIF[MA0138.2:Nrsf]6
MOTIF[MA0139.1:CTCF]74
MOTIF[MA0147.1:Cmyc]12
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]4
MOTIF[MA0159.1:RXR]2
MOTIF[MA0162.1:Egr1]31
NON_SYNONYMOUS_CODING11388
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION238
NON_SYNONYMOUS_START3
PROTEIN_INTERACTION_LOCUS48
SPLICE_SITE_REGION45
SPLICE_SITE_REGION+SYNONYMOUS_CODING273
START_GAINED294
START_LOST17
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
START_LOST+CODON_INSERTION1
STOP_GAINED105
STOP_GAINED+SPLICE_SITE_REGION2
STOP_LOST25
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING11895
SYNONYMOUS_STOP10
TRANSCRIPT1
None0

Type Total Variants
1082
MISSENSE11674
NONSENSE107
SILENT12178
None0

Type Total Variants
HIGH399
LOW12631
MODERATE11851
MODIFIER160
None0

Type Total Variants
.127990
LowQual5767

Quality Value
Min10.2
Average994.137650215615
Max65449.29

Read Depth Value
Min1
Average52.53994931106409
Max4871

Type Total Variants
None0
31
5|51
23

Chromossome Total Variants
112416
105780
117866
128169
132780
144660
154348
165728
176949
182315
198151
29564
203478
212065
223023
37403
45915
55808
67718
77003
85026
95391
X2124
Y77