Name: campjacxx-1-id01 indels_annotated
Variants: 39679
Novel Variants: 9769 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 39679 20891 1/. 5977 1/1 12811 1/0
Total Gene-associated SNVs 39679 20891 1/. 5977 1/1 12811 1/0

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION209
CODON_CHANGE_PLUS_CODON_DELETION+SPLICE_SITE_REGION2
CODON_CHANGE_PLUS_CODON_INSERTION78
CODON_DELETION96
CODON_DELETION+SPLICE_SITE_REGION1
CODON_INSERTION56
CODON_INSERTION+SPLICE_SITE_REGION1
FRAME_SHIFT309
FRAME_SHIFT+SPLICE_SITE_REGION37
FRAME_SHIFT+START_LOST5
FRAME_SHIFT+START_LOST+SPLICE_SITE_REGION1
FRAME_SHIFT+STOP_GAINED4
FRAME_SHIFT+STOP_LOST4
MOTIF_DELETED2
MOTIF[MA0003.1:Ap2alpha]7
MOTIF[MA0014.1:Pax5]1
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0058.1:Max]3
MOTIF[MA0062.2:Gabp]6
MOTIF[MA0079.1:SP1]1
MOTIF[MA0079.2:SP1]5
MOTIF[MA0080.2:PU1]2
MOTIF[MA0093.1:USF1]2
MOTIF[MA0095.1:Yy1]1
MOTIF[MA0099.1:Cfos]2
MOTIF[MA0099.2:AP1]2
MOTIF[MA0114.1:HNF4A]1
MOTIF[MA0139.1:CTCF]19
MOTIF[MA0147.1:Cmyc]3
MOTIF[MA0154.1:EBF]3
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]7
PROTEIN_INTERACTION_LOCUS1
SPLICE_SITE_REGION7
START_LOST+CODON_DELETION1
TRANSCRIPT3
None0

Type Total Variants
885
None0

Type Total Variants
HIGH362
LOW77
MODERATE443
MODIFIER3
None0

Type Total Variants
low_coverage2787
low_coverage;low_qual2475
low_coverage;read_end_ratio5
low_coverage;read_end_ratio;low_qual11
low_qual5788
low_VariantRatio8
low_VariantRatio;low_qual53
low_VariantReads600
low_VariantReads;low_coverage6184
low_VariantReads;low_coverage;low_qual8567
low_VariantReads;low_coverage;read_end_ratio244
low_VariantReads;low_coverage;read_end_ratio;low_qual618
low_VariantReads;low_qual1272
low_VariantReads;low_VariantRatio11
low_VariantReads;low_VariantRatio;low_qual25
low_VariantReads;read_end_ratio39
low_VariantReads;read_end_ratio;low_qual132
PASS10799
read_end_ratio38
read_end_ratio;low_qual23

Quality Value
Min1.0
Average9.73469593487739
Max100.0

Read Depth Value
Min1
Average27.061720305451246
Max2044

Type Total Variants
None0

Chromossome Total Variants
13489
101892
112008
121943
131009
141273
151309
161386
171731
18859
191703
23237
20943
21686
22781
32141
42095
52012
62326
72172
81538
91627
MT3
X1428
Y88