Name: 101368 ug filtered variants
Variants: 41816
Novel Variants: 4394 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 41816 156 1/2 18308 0/1 23352 1/1
Total Gene-associated SNVs 41816 156 1/2 18308 0/1 23352 1/1

Type Total Variants
33
CODON_CHANGE_PLUS_CODON_DELETION52
CODON_CHANGE_PLUS_CODON_INSERTION30
CODON_DELETION17
CODON_INSERTION28
FRAME_SHIFT56
FRAME_SHIFT+SPLICE_SITE_REGION6
FRAME_SHIFT+START_LOST2
FRAME_SHIFT+STOP_GAINED2
FRAME_SHIFT+STOP_LOST1
MOTIF[MA0003.1:Ap2alpha]1
MOTIF[MA0014.1:Pax5]2
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0024.1:E2F1]3
MOTIF[MA0058.1:Max]2
MOTIF[MA0059.1:Cmyc]1
MOTIF[MA0062.1:Gabp]1
MOTIF[MA0062.2:Gabp]3
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]3
MOTIF[MA0079.2:SP1]16
MOTIF[MA0093.1:USF1]2
MOTIF[MA0095.1:Yy1]5
MOTIF[MA0114.1:HNF4A]1
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]2
MOTIF[MA0139.1:CTCF]37
MOTIF[MA0147.1:Cmyc]1
MOTIF[MA0162.1:Egr1]6
NON_SYNONYMOUS_CODING3731
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION58
PROTEIN_INTERACTION_LOCUS7
SPLICE_SITE_REGION8
SPLICE_SITE_REGION+SYNONYMOUS_CODING38
START_GAINED46
START_LOST1
STOP_GAINED49
STOP_GAINED+CODON_INSERTION1
STOP_LOST6
SYNONYMOUS_CODING2343
SYNONYMOUS_STOP3
None0

Type Total Variants
378
MISSENSE3796
NONSENSE49
SILENT2384
None0

Type Total Variants
HIGH131
LOW2466
MODERATE3916
MODIFIER94
None0

Type Total Variants
LowCoverage3598
LowCoverage;LowQD;LowQual;SnpCluster;VeryLowQual8
LowCoverage;LowQD;LowQual;VeryLowQual19
LowCoverage;LowQual2228
LowCoverage;LowQual;SnpCluster339
LowCoverage;LowQual;SnpCluster;VeryLowQual1100
LowCoverage;LowQual;VeryLowQual14227
LowCoverage;SnpCluster636
LowQD657
LowQD;LowQual207
LowQD;LowQual;SnpCluster103
LowQD;LowQual;SnpCluster;VeryLowQual211
LowQD;LowQual;VeryLowQual513
LowQD;SnpCluster338
LowQual258
LowQual;SnpCluster100
LowQual;SnpCluster;VeryLowQual26
LowQual;VeryLowQual108
PASS14418
SnpCluster2722

Quality Value
Min10.2
Average563.464976563823
Max72805.73

Read Depth Value
Min1
Average54.801296154581976
Max2548

Type Total Variants
None0

Chromossome Total Variants
13582
102374
121840
13988
141386
151177
162478
172483
181230
192291
23932
201297
211070
22969
32608
41813
52081
72853
81531
92247
M33
X652
Y901