Name: hp37_5_filt_10x
Variants: 91208
Novel Variants: 1740 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 91208 103 1/2 57684 0/1 33421 1/1
Total Gene-associated SNVs 91208 103 1/2 57684 0/1 33421 1/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION67
CODON_CHANGE_PLUS_CODON_DELETION+SPLICE_SITE_REGION1
CODON_CHANGE_PLUS_CODON_INSERTION44
CODON_DELETION29
CODON_DELETION+SPLICE_SITE_REGION1
CODON_INSERTION38
CODON_INSERTION+SPLICE_SITE_REGION1
FRAME_SHIFT137
FRAME_SHIFT+SPLICE_SITE_REGION25
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+STOP_GAINED4
FRAME_SHIFT+STOP_LOST3
MOTIF[MA0003.1:Ap2alpha]4
MOTIF[MA0014.1:Pax5]5
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]5
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0058.1:Max]7
MOTIF[MA0059.1:Cmyc]5
MOTIF[MA0062.1:Gabp]5
MOTIF[MA0062.2:Gabp]13
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0079.1:SP1]6
MOTIF[MA0079.2:SP1]13
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]1
MOTIF[MA0093.1:USF1]6
MOTIF[MA0095.1:Yy1]5
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0099.2:AP1]3
MOTIF[MA0114.1:HNF4A]6
MOTIF[MA0138.2:Nrsf]4
MOTIF[MA0139.1:CTCF]67
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]7
MOTIF[MA0154.1:EBF]4
MOTIF[MA0159.1:RXR]2
MOTIF[MA0162.1:Egr1]12
NON_SYNONYMOUS_CODING10216
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION201
PROTEIN_INTERACTION_LOCUS43
SPLICE_SITE_REGION42
SPLICE_SITE_REGION+SYNONYMOUS_CODING195
START_GAINED285
START_LOST12
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED118
STOP_GAINED+SPLICE_SITE_REGION2
STOP_LOST22
STOP_LOST+CODON_DELETION1
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING10715
SYNONYMOUS_STOP11
None0

Type Total Variants
913
MISSENSE10454
NONSENSE120
SILENT10921
None0

Type Total Variants
HIGH375
LOW11330
MODERATE10598
MODIFIER105
None0

Type Total Variants
PASS91208

Quality Value
Min30.73
Average438.968444654127
Max27646.73

Read Depth Value
Min5
Average30.47728269450048
Max250

Type Total Variants
None0
31
51
22

Chromossome Total Variants
18717
104029
115513
124704
131680
143251
152885
163985
174465
181760
194766
27338
202579
211647
222090
35137
44092
53826
65289
74696
83115
93911
X921
Y812