Name: hp37_filt_10x
Variants: 92149
Novel Variants: 1706 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 92149 104 1/2 58736 0/1 33309 1/1
Total Gene-associated SNVs 92149 104 1/2 58736 0/1 33309 1/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION66
CODON_CHANGE_PLUS_CODON_INSERTION45
CODON_DELETION39
CODON_DELETION+SPLICE_SITE_REGION2
CODON_INSERTION36
CODON_INSERTION+SPLICE_SITE_REGION1
FRAME_SHIFT155
FRAME_SHIFT+SPLICE_SITE_REGION28
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+STOP_GAINED5
FRAME_SHIFT+STOP_LOST4
MOTIF_DELETED1
MOTIF[MA0003.1:Ap2alpha]5
MOTIF[MA0014.1:Pax5]8
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0024.1:E2F1]5
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0047.2:FOXA2]1
MOTIF[MA0058.1:Max]5
MOTIF[MA0059.1:Cmyc]4
MOTIF[MA0062.1:Gabp]1
MOTIF[MA0062.2:Gabp]15
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0079.1:SP1]4
MOTIF[MA0079.2:SP1]12
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]1
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]10
MOTIF[MA0095.1:Yy1]3
MOTIF[MA0099.2:AP1]2
MOTIF[MA0114.1:HNF4A]5
MOTIF[MA0138.2:Nrsf]4
MOTIF[MA0139.1:CTCF]57
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]3
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]4
MOTIF[MA0159.1:RXR]2
MOTIF[MA0162.1:Egr1]13
NON_SYNONYMOUS_CODING10086
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION215
PROTEIN_INTERACTION_LOCUS36
SPLICE_SITE_REGION49
SPLICE_SITE_REGION+SYNONYMOUS_CODING206
START_GAINED285
START_LOST12
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED116
STOP_LOST24
STOP_LOST+CODON_DELETION1
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING10682
SYNONYMOUS_STOP9
None0

Type Total Variants
929
MISSENSE10340
NONSENSE116
SILENT10897
None0

Type Total Variants
HIGH389
LOW11305
MODERATE10490
MODIFIER98
None0

Type Total Variants
PASS92149

Quality Value
Min30.74
Average453.309000206437
Max25608.73

Read Depth Value
Min6
Average31.700322304094456
Max250

Type Total Variants
None0
31
2|21
22

Chromossome Total Variants
18629
104196
115714
124591
131690
143314
152927
164017
174522
181675
194573
27178
202476
211530
222094
35220
43927
53883
65426
74777
83226
94040
X1827
Y697