Name: hp37_1_filt_10x
Variants: 92513
Novel Variants: 1706 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 92513 99 1/2 59822 0/1 32592 1/1
Total Gene-associated SNVs 92513 99 1/2 59822 0/1 32592 1/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION80
CODON_CHANGE_PLUS_CODON_INSERTION47
CODON_DELETION33
CODON_INSERTION44
CODON_INSERTION+SPLICE_SITE_REGION1
FRAME_SHIFT153
FRAME_SHIFT+SPLICE_SITE_REGION24
FRAME_SHIFT+START_LOST3
FRAME_SHIFT+STOP_GAINED2
FRAME_SHIFT+STOP_LOST3
MOTIF[MA0003.1:Ap2alpha]7
MOTIF[MA0014.1:Pax5]5
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0024.1:E2F1]4
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0058.1:Max]8
MOTIF[MA0059.1:Cmyc]6
MOTIF[MA0062.1:Gabp]6
MOTIF[MA0062.2:Gabp]19
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0079.1:SP1]6
MOTIF[MA0079.2:SP1]11
MOTIF[MA0080.1:PU1]2
MOTIF[MA0080.2:PU1]1
MOTIF[MA0093.1:USF1]5
MOTIF[MA0095.1:Yy1]3
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]5
MOTIF[MA0138.2:Nrsf]4
MOTIF[MA0139.1:CTCF]65
MOTIF[MA0147.1:Cmyc]4
MOTIF[MA0154.1:EBF]3
MOTIF[MA0159.1:RXR]2
MOTIF[MA0162.1:Egr1]9
NON_SYNONYMOUS_CODING10556
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION226
NON_SYNONYMOUS_START2
PROTEIN_INTERACTION_LOCUS44
SPLICE_SITE_REGION46
SPLICE_SITE_REGION+SYNONYMOUS_CODING217
START_GAINED300
START_LOST15
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED115
STOP_GAINED+SPLICE_SITE_REGION2
STOP_LOST24
STOP_LOST+CODON_DELETION1
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING10754
SYNONYMOUS_STOP9
None0

Type Total Variants
962
MISSENSE10826
NONSENSE117
SILENT10980
None0

Type Total Variants
HIGH390
LOW11409
MODERATE10987
MODIFIER99
None0

Type Total Variants
PASS92513

Quality Value
Min30.74
Average435.554021489041
Max26713.73

Read Depth Value
Min6
Average30.544388356231018
Max250

Type Total Variants
None0
32
21

Chromossome Total Variants
18842
104189
115664
124957
131721
143267
153001
163889
174647
181663
194873
27384
202384
211681
222172
35244
44131
53972
65349
74855
83046
93848
X940
Y794