Name: 22 recalibrated filtered postcgp gqfiltered
Variants: 120343
Novel Variants: 118253 (Not in latest DbSNP Build)

Type Total Variants
932
CODON_CHANGE_PLUS_CODON_DELETION12
CODON_CHANGE_PLUS_CODON_DELETION+SPLICE_SITE_REGION2
CODON_CHANGE_PLUS_CODON_INSERTION13
CODON_CHANGE_PLUS_CODON_INSERTION+SPLICE_SITE_REGION1
CODON_DELETION9
CODON_DELETION+SPLICE_SITE_REGION1
CODON_INSERTION17
FRAME_SHIFT297
FRAME_SHIFT+SPLICE_SITE_REGION10
FRAME_SHIFT+START_LOST1
FRAME_SHIFT+STOP_GAINED4
MOTIF_DELETED1
MOTIF[MA0003.1:Ap2alpha]2
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0024.1:E2F1]1
MOTIF[MA0035.2:Gata1]3
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0047.2:FOXA2]3
MOTIF[MA0058.1:Max]10
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.1:Gabp]1
MOTIF[MA0062.2:Gabp]14
MOTIF[MA0065.1:PPARG]5
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0074.1:RXRA]1
MOTIF[MA0079.1:SP1]4
MOTIF[MA0079.2:SP1]8
MOTIF[MA0080.2:PU1]1
MOTIF[MA0093.1:USF1]7
MOTIF[MA0095.1:Yy1]3
MOTIF[MA0099.1:Cfos]4
MOTIF[MA0099.2:AP1]5
MOTIF[MA0105.1:NFKB]1
MOTIF[MA0114.1:HNF4A]9
MOTIF[MA0138.2:Nrsf]9
MOTIF[MA0139.1:CTCF]55
MOTIF[MA0147.1:Cmyc]13
MOTIF[MA0148.1:FOXA1]3
MOTIF[MA0154.1:EBF]4
MOTIF[MA0162.1:Egr1]3
NON_SYNONYMOUS_CODING1782
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION55
NON_SYNONYMOUS_START1
PROTEIN_INTERACTION_LOCUS23
SPLICE_SITE_REGION15
SPLICE_SITE_REGION+SYNONYMOUS_CODING39
START_GAINED50
START_LOST1
STOP_GAINED91
STOP_GAINED+CODON_CHANGE_PLUS_CODON_DELETION1
STOP_GAINED+SPLICE_SITE_REGION5
STOP_LOST4
STOP_LOST+CODON_DELETION1
SYNONYMOUS_CODING1478
SYNONYMOUS_START4
SYNONYMOUS_STOP1
None0

Type Total Variants
2344
MISSENSE1843
NONSENSE96
SILENT744
None0

Type Total Variants
HIGH438
LOW1657
MODERATE1892
MODIFIER1040
None0

Type Total Variants
PASS119391
VQSRTrancheSNP99.90to100.00952

Quality Value
Min10.0
Average31068.7404129919
Max1531534.15

Read Depth Value
Min0
Average68.58191170238402
Max1604

Type Total Variants
None0
5|23
-55
2368
2|2|2|2|25
2|36
5|31
-62
5|2|31
391
2|53
2|5|51
2|2|2|24
67
42
2|3|21
2|2|2|2|2|22
2|2|24
6|2|21
3|23
2|257
520

Chromossome Total Variants
111777
105269
116987
126585
132431
144077
154197
165727
176946
182166
197727
28907
202908
211782
222780
36134
44945
55363
66265
76202
84232
95049
X1801
Y86