Name: 21 recalibrated filtered postcgp gqfiltered
Variants: 124621
Novel Variants: 122567 (Not in latest DbSNP Build)

Type Total Variants
777
CODON_CHANGE_PLUS_CODON_DELETION10
CODON_CHANGE_PLUS_CODON_DELETION+SPLICE_SITE_REGION2
CODON_CHANGE_PLUS_CODON_INSERTION10
CODON_CHANGE_PLUS_CODON_INSERTION+SPLICE_SITE_REGION1
CODON_DELETION11
CODON_INSERTION16
FRAME_SHIFT341
FRAME_SHIFT+SPLICE_SITE_REGION8
FRAME_SHIFT+STOP_GAINED4
MOTIF_DELETED3
MOTIF[MA0003.1:Ap2alpha]4
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0024.1:E2F1]1
MOTIF[MA0035.2:Gata1]2
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0058.1:Max]10
MOTIF[MA0059.1:Cmyc]7
MOTIF[MA0062.1:Gabp]1
MOTIF[MA0062.2:Gabp]15
MOTIF[MA0065.1:PPARG]2
MOTIF[MA0065.2:PPARG]2
MOTIF[MA0079.1:SP1]3
MOTIF[MA0079.2:SP1]9
MOTIF[MA0080.2:PU1]9
MOTIF[MA0093.1:USF1]10
MOTIF[MA0095.1:Yy1]5
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0099.2:AP1]5
MOTIF[MA0114.1:HNF4A]6
MOTIF[MA0115.1:RNR1H2]1
MOTIF[MA0138.2:Nrsf]6
MOTIF[MA0139.1:CTCF]71
MOTIF[MA0147.1:Cmyc]13
MOTIF[MA0148.1:FOXA1]4
MOTIF[MA0154.1:EBF]2
MOTIF[MA0159.1:RXR]2
MOTIF[MA0162.1:Egr1]6
MOTIF[MA0239.1:Pax5]1
NON_SYNONYMOUS_CODING1907
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION62
NON_SYNONYMOUS_START1
PROTEIN_INTERACTION_LOCUS26
SPLICE_SITE_REGION18
SPLICE_SITE_REGION+SYNONYMOUS_CODING32
START_GAINED51
START_LOST2
STOP_GAINED92
STOP_GAINED+CODON_CHANGE_PLUS_CODON_DELETION1
STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION3
STOP_LOST2
SYNONYMOUS_CODING1543
SYNONYMOUS_START3
SYNONYMOUS_STOP1
None0

Type Total Variants
2317
MISSENSE1974
NONSENSE95
SILENT742
None0

Type Total Variants
HIGH480
LOW1727
MODERATE2019
MODIFIER902
None0

Type Total Variants
PASS123734
VQSRTrancheSNP99.90to100.00887

Quality Value
Min10.01
Average30397.3273845552
Max1528569.86

Read Depth Value
Min0
Average66.7906532606864
Max1695

Type Total Variants
None0
-55
5|21
2390
2|2|2|2|24
2|39
-61
3118
2|52
5|5|2|31
69
2|2|2|25
42
2|3|23
6|6|6|6|61
2|2|24
3|26
5|5|21
5|41
5|4|51
2|259
519

Chromossome Total Variants
111810
105562
117098
126744
132513
144270
154755
165150
176888
182149
198385
28897
203228
211834
223159
36367
44983
55515
66576
75981
84852
95378
X2473
Y54