Name: 23 recalibrated filtered postcgp gqfiltered
Variants: 120862
Novel Variants: 118813 (Not in latest DbSNP Build)

Type Total Variants
804
CODON_CHANGE_PLUS_CODON_DELETION13
CODON_CHANGE_PLUS_CODON_DELETION+SPLICE_SITE_REGION2
CODON_CHANGE_PLUS_CODON_INSERTION13
CODON_CHANGE_PLUS_CODON_INSERTION+SPLICE_SITE_REGION1
CODON_DELETION7
CODON_INSERTION14
FRAME_SHIFT313
FRAME_SHIFT+SPLICE_SITE_REGION7
FRAME_SHIFT+STOP_GAINED3
FRAME_SHIFT+STOP_LOST1
MOTIF_DELETED2
MOTIF[MA0003.1:Ap2alpha]2
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]1
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0047.2:FOXA2]2
MOTIF[MA0058.1:Max]10
MOTIF[MA0059.1:Cmyc]6
MOTIF[MA0062.1:Gabp]1
MOTIF[MA0062.2:Gabp]13
MOTIF[MA0065.1:PPARG]3
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0074.1:RXRA]1
MOTIF[MA0079.1:SP1]2
MOTIF[MA0079.2:SP1]10
MOTIF[MA0080.2:PU1]7
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]9
MOTIF[MA0095.1:Yy1]2
MOTIF[MA0099.1:Cfos]5
MOTIF[MA0099.2:AP1]5
MOTIF[MA0105.1:NFKB]1
MOTIF[MA0114.1:HNF4A]10
MOTIF[MA0115.1:RNR1H2]1
MOTIF[MA0138.2:Nrsf]8
MOTIF[MA0139.1:CTCF]67
MOTIF[MA0147.1:Cmyc]14
MOTIF[MA0148.1:FOXA1]4
MOTIF[MA0154.1:EBF]2
MOTIF[MA0162.1:Egr1]5
MOTIF[MA0239.1:Pax5]1
NON_SYNONYMOUS_CODING1862
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION62
NON_SYNONYMOUS_START1
PROTEIN_INTERACTION_LOCUS25
SPLICE_SITE_REGION20
SPLICE_SITE_REGION+SYNONYMOUS_CODING34
START_GAINED45
STOP_GAINED95
STOP_GAINED+CODON_CHANGE_PLUS_CODON_DELETION1
STOP_GAINED+SPLICE_SITE_REGION5
STOP_LOST5
STOP_LOST+CODON_DELETION1
SYNONYMOUS_CODING1516
SYNONYMOUS_START3
SYNONYMOUS_STOP1
None0

Type Total Variants
2286
MISSENSE1930
NONSENSE100
SILENT739
None0

Type Total Variants
HIGH456
LOW1699
MODERATE1974
MODIFIER926
None0

Type Total Variants
PASS120032
VQSRTrancheSNP99.90to100.00830

Quality Value
Min10.01
Average30585.983615782
Max1528315.86

Read Depth Value
Min0
Average46.09383429034767
Max1591

Type Total Variants
None0
-55
5|22
2385
2|2|2|2|22
2|36
5|2|31
2|53
5|5|2|31
2|5|51
2|2|2|25
65
42
2|3|22
6|6|6|6|61
2|2|24
6|2|21
3|24
5|5|21
5|4|51
2|249
522
-62
3111

Chromossome Total Variants
111663
105475
116949
126592
132417
144101
154517
165608
176518
182047
198083
28558
202943
211727
222951
36471
44853
55409
66338
75928
84636
95168
X1811
Y99