Name: 24 recalibrated filtered postcgp gqfiltered
Variants: 124455
Novel Variants: 122361 (Not in latest DbSNP Build)

Type Total Variants
907
CODON_CHANGE_PLUS_CODON_DELETION12
CODON_CHANGE_PLUS_CODON_DELETION+SPLICE_SITE_REGION2
CODON_CHANGE_PLUS_CODON_INSERTION13
CODON_CHANGE_PLUS_CODON_INSERTION+SPLICE_SITE_REGION1
CODON_DELETION8
CODON_DELETION+SPLICE_SITE_REGION1
CODON_INSERTION17
FRAME_SHIFT322
FRAME_SHIFT+SPLICE_SITE_REGION8
FRAME_SHIFT+STOP_GAINED5
MOTIF_DELETED2
MOTIF[MA0003.1:Ap2alpha]2
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0024.1:E2F1]1
MOTIF[MA0035.2:Gata1]3
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0047.2:FOXA2]3
MOTIF[MA0058.1:Max]11
MOTIF[MA0059.1:Cmyc]8
MOTIF[MA0062.2:Gabp]15
MOTIF[MA0065.1:PPARG]3
MOTIF[MA0065.2:PPARG]2
MOTIF[MA0074.1:RXRA]1
MOTIF[MA0079.1:SP1]3
MOTIF[MA0079.2:SP1]9
MOTIF[MA0080.2:PU1]8
MOTIF[MA0093.1:USF1]7
MOTIF[MA0095.1:Yy1]3
MOTIF[MA0099.2:AP1]6
MOTIF[MA0114.1:HNF4A]6
MOTIF[MA0115.1:RNR1H2]1
MOTIF[MA0138.2:Nrsf]7
MOTIF[MA0139.1:CTCF]58
MOTIF[MA0147.1:Cmyc]13
MOTIF[MA0148.1:FOXA1]2
MOTIF[MA0154.1:EBF]2
MOTIF[MA0162.1:Egr1]7
MOTIF[MA0239.1:Pax5]1
NON_SYNONYMOUS_CODING1795
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION59
NON_SYNONYMOUS_START1
PROTEIN_INTERACTION_LOCUS25
SPLICE_SITE_REGION16
SPLICE_SITE_REGION+SYNONYMOUS_CODING36
START_GAINED54
START_LOST1
STOP_GAINED99
STOP_GAINED+SPLICE_SITE_REGION5
STOP_LOST5
STOP_LOST+CODON_DELETION1
SYNONYMOUS_CODING1524
SYNONYMOUS_START2
SYNONYMOUS_STOP2
None0

Type Total Variants
2404
MISSENSE1861
NONSENSE104
SILENT739
None0

Type Total Variants
HIGH471
LOW1708
MODERATE1908
MODIFIER1021
None0

Type Total Variants
PASS122766
VQSRTrancheSNP99.90to100.001689

Quality Value
Min10.01
Average29991.8149895197
Max1527690.86

Read Depth Value
Min0
Average40.33268249568117
Max1410

Type Total Variants
None0
-55
5|23
2401
2|2|2|2|22
521
2|37
5|31
-62
5|2|31
3105
2|53
2|5|51
67
2|2|2|25
42
2|3|21
2|2|24
3|25
5|4|51
2|271

Chromossome Total Variants
112142
105400
117220
126832
132553
144211
154667
165603
176765
182203
198100
28873
203066
211822
223055
36415
45088
55304
66583
76122
84775
95226
X2396
Y34