Name: hp-01 fil10x
Variants: 873747
Novel Variants: 817784 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 873747 860468 0/1 13279 1/1
Total Gene-associated SNVs 873747 860468 0/1 13279 1/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION22
CODON_CHANGE_PLUS_CODON_INSERTION18
CODON_DELETION40
CODON_INSERTION29
FRAME_SHIFT187
FRAME_SHIFT+SPLICE_SITE_REGION15
FRAME_SHIFT+STOP_GAINED1
FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION1
FRAME_SHIFT+STOP_LOST1
MOTIF[MA0003.1:Ap2alpha]50
MOTIF[MA0005.1:MEF2C]1
MOTIF[MA0014.1:Pax5]21
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]27
MOTIF[MA0035.2:Gata1]6
MOTIF[MA0036.1:Gata2]5
MOTIF[MA0047.1:FOXA2]2
MOTIF[MA0047.2:FOXA2]11
MOTIF[MA0058.1:Max]75
MOTIF[MA0059.1:Cmyc]28
MOTIF[MA0062.1:Gabp]59
MOTIF[MA0062.2:Gabp]187
MOTIF[MA0065.1:PPARG]13
MOTIF[MA0065.2:PPARG]9
MOTIF[MA0074.1:RXRA]3
MOTIF[MA0079.1:SP1]29
MOTIF[MA0079.2:SP1]50
MOTIF[MA0080.1:PU1]7
MOTIF[MA0080.2:PU1]40
MOTIF[MA0083.1:Srf]5
MOTIF[MA0093.1:USF1]43
MOTIF[MA0095.1:Yy1]44
MOTIF[MA0099.1:Cfos]15
MOTIF[MA0099.2:AP1]33
MOTIF[MA0105.1:NFKB]3
MOTIF[MA0114.1:HNF4A]77
MOTIF[MA0115.1:RNR1H2]1
MOTIF[MA0138.1:Nrsf]5
MOTIF[MA0138.2:Nrsf]35
MOTIF[MA0139.1:CTCF]329
MOTIF[MA0140.1:Tal1]10
MOTIF[MA0147.1:Cmyc]51
MOTIF[MA0148.1:FOXA1]16
MOTIF[MA0154.1:EBF]25
MOTIF[MA0159.1:RXR]6
MOTIF[MA0162.1:Egr1]85
MOTIF[MA0239.1:Pax5]3
NON_SYNONYMOUS_CODING292326
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION7792
NON_SYNONYMOUS_START238
PROTEIN_INTERACTION_LOCUS1956
RARE_AMINO_ACID1
SPLICE_SITE_REGION490
SPLICE_SITE_REGION+NON_SYNONYMOUS_START9
SPLICE_SITE_REGION+SYNONYMOUS_CODING1546
START_GAINED2090
START_LOST386
START_LOST+SPLICE_SITE_REGION10
STOP_GAINED14428
STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION500
STOP_LOST648
STOP_LOST+SPLICE_SITE_REGION21
SYNONYMOUS_CODING63814
SYNONYMOUS_STOP8
None0

Type Total Variants
6263
MISSENSE301430
NONSENSE14928
SILENT65368
None0

Type Total Variants
HIGH18156
LOW68636
MODERATE300227
MODIFIER970
None0

Type Total Variants
.873747

Quality Value
Min3.01
Average19.2079781790295
Max227.0

Read Depth Value
Min0
Average0.0
Max0

Type Total Variants
None0
5|51
51
21

Chromossome Total Variants
188459
1034768
1154982
1248072
1314543
1429448
1530416
1635573
1746554
1812822
1950818
262313
2023443
219568
2221406
353063
432708
538902
644139
741643
830441
936697
X32675
Y294