Name: dg001 final
Variants: 84289
Novel Variants: 596 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 84289 130 1/2 49444 0/1 34715 1/1
Total Gene-associated SNVs 84289 130 1/2 49444 0/1 34715 1/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION127
CODON_CHANGE_PLUS_CODON_INSERTION82
CODON_DELETION48
CODON_DELETION+SPLICE_SITE_REGION1
CODON_INSERTION65
CODON_INSERTION+SPLICE_SITE_REGION1
FRAME_SHIFT247
FRAME_SHIFT+SPLICE_SITE_REGION40
FRAME_SHIFT+START_LOST5
FRAME_SHIFT+STOP_GAINED4
FRAME_SHIFT+STOP_LOST2
MOTIF_DELETED1
MOTIF[MA0003.1:Ap2alpha]18
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]2
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0058.1:Max]11
MOTIF[MA0059.1:Cmyc]1
MOTIF[MA0062.1:Gabp]7
MOTIF[MA0062.2:Gabp]21
MOTIF[MA0079.1:SP1]3
MOTIF[MA0079.2:SP1]10
MOTIF[MA0080.2:PU1]1
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]2
MOTIF[MA0095.1:Yy1]6
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]2
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]5
MOTIF[MA0139.1:CTCF]54
MOTIF[MA0147.1:Cmyc]4
MOTIF[MA0154.1:EBF]1
MOTIF[MA0159.1:RXR]2
MOTIF[MA0162.1:Egr1]15
NON_SYNONYMOUS_CODING10187
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION224
NON_SYNONYMOUS_START1
PROTEIN_INTERACTION_LOCUS43
SPLICE_SITE_REGION24
SPLICE_SITE_REGION+SYNONYMOUS_CODING240
SPLICE_SITE_REGION+SYNONYMOUS_STOP1
START_GAINED204
START_LOST11
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
START_LOST+CODON_DELETION1
STOP_GAINED90
STOP_GAINED+CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST23
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING11187
SYNONYMOUS_STOP6
TRANSCRIPT3
None0

Type Total Variants
1073
MISSENSE10448
NONSENSE91
SILENT11434
None0

Type Total Variants
HIGH471
LOW11744
MODERATE10735
MODIFIER96
None0

Type Total Variants
MG_INDEL_Filter54
MG_SNP_Filter1578
PASS82657

Quality Value
Min30.29
Average893.541486908901
Max25648.77

Read Depth Value
Min1
Average45.04080010440271
Max866

Type Total Variants
None0
31
23
5|51
2|22

Chromossome Total Variants
18658
103811
115753
124532
131664
143009
152803
163696
174860
181333
195627
25762
202235
211291
221909
34472
43502
53581
63712
74566
83051
93444
X1011
Y7