Name: bipasha passed ontarget variants
Variants: 74494
Novel Variants: 849 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 74494 222 1/2 46195 0/1 28077 1/1
Total Gene-associated SNVs 74494 222 1/2 46195 0/1 28077 1/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION82
CODON_CHANGE_PLUS_CODON_DELETION+SPLICE_SITE_REGION1
CODON_CHANGE_PLUS_CODON_INSERTION54
CODON_DELETION44
CODON_DELETION+SPLICE_SITE_REGION1
CODON_INSERTION47
CODON_INSERTION+SPLICE_SITE_REGION1
FRAME_SHIFT171
FRAME_SHIFT+SPLICE_SITE_REGION38
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+STOP_GAINED5
FRAME_SHIFT+STOP_LOST2
MOTIF_DELETED2
MOTIF[MA0003.1:Ap2alpha]11
MOTIF[MA0014.1:Pax5]2
MOTIF[MA0024.1:E2F1]4
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0058.1:Max]9
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.1:Gabp]4
MOTIF[MA0062.2:Gabp]19
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]4
MOTIF[MA0079.2:SP1]15
MOTIF[MA0080.1:PU1]1
MOTIF[MA0093.1:USF1]2
MOTIF[MA0095.1:Yy1]7
MOTIF[MA0114.1:HNF4A]6
MOTIF[MA0138.2:Nrsf]4
MOTIF[MA0139.1:CTCF]36
MOTIF[MA0147.1:Cmyc]3
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]3
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]15
NON_SYNONYMOUS_CODING9578
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION187
NON_SYNONYMOUS_START1
PROTEIN_INTERACTION_LOCUS40
SPLICE_SITE_REGION62
SPLICE_SITE_REGION+SYNONYMOUS_CODING217
START_GAINED311
START_LOST14
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED93
STOP_GAINED+CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST20
STOP_LOST+CODON_DELETION1
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING10573
SYNONYMOUS_STOP7
TRANSCRIPT1
None0

Type Total Variants
1021
MISSENSE9802
NONSENSE94
SILENT10797
None0

Type Total Variants
HIGH393
LOW11254
MODERATE9995
MODIFIER72
None0

Type Total Variants
PASS74494

Quality Value
Min50.7
Average1459.63910462529
Max82713.77

Read Depth Value
Min2
Average76.4031062904395
Max2711

Type Total Variants
None0
33
24

Chromossome Total Variants
17647
103208
114618
124194
131356
142729
152652
162943
173502
181108
193666
25301
201931
211115
221875
34303
43418
53654
64530
73740
82898
93040
X1037
Y29