Name: suchitra passed ontarget variants
Variants: 74789
Novel Variants: 838 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 74789 214 1/2 46378 0/1 28197 1/1
Total Gene-associated SNVs 74789 214 1/2 46378 0/1 28197 1/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION89
CODON_CHANGE_PLUS_CODON_DELETION+SPLICE_SITE_REGION1
CODON_CHANGE_PLUS_CODON_INSERTION57
CODON_DELETION46
CODON_DELETION+SPLICE_SITE_REGION1
CODON_INSERTION52
CODON_INSERTION+SPLICE_SITE_REGION1
FRAME_SHIFT173
FRAME_SHIFT+SPLICE_SITE_REGION39
FRAME_SHIFT+START_LOST3
FRAME_SHIFT+START_LOST+SPLICE_SITE_REGION1
FRAME_SHIFT+STOP_GAINED5
FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION1
FRAME_SHIFT+STOP_LOST2
MOTIF_DELETED3
MOTIF[MA0003.1:Ap2alpha]9
MOTIF[MA0014.1:Pax5]3
MOTIF[MA0024.1:E2F1]5
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0058.1:Max]8
MOTIF[MA0059.1:Cmyc]2
MOTIF[MA0062.1:Gabp]2
MOTIF[MA0062.2:Gabp]24
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]5
MOTIF[MA0079.2:SP1]13
MOTIF[MA0080.1:PU1]3
MOTIF[MA0093.1:USF1]1
MOTIF[MA0095.1:Yy1]7
MOTIF[MA0114.1:HNF4A]4
MOTIF[MA0138.2:Nrsf]3
MOTIF[MA0139.1:CTCF]35
MOTIF[MA0147.1:Cmyc]3
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]3
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]18
NON_SYNONYMOUS_CODING9605
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION193
NON_SYNONYMOUS_START1
PROTEIN_INTERACTION_LOCUS39
SPLICE_SITE_REGION64
SPLICE_SITE_REGION+SYNONYMOUS_CODING195
START_GAINED321
START_LOST16
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
START_LOST+CODON_DELETION1
STOP_GAINED85
STOP_GAINED+CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST23
STOP_LOST+CODON_DELETION1
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING10572
SYNONYMOUS_STOP7
TRANSCRIPT2
None0

Type Total Variants
1056
MISSENSE9840
NONSENSE86
SILENT10774
None0

Type Total Variants
HIGH394
LOW11243
MODERATE10045
MODIFIER74
None0

Type Total Variants
PASS74789

Quality Value
Min50.25
Average1358.86636965293
Max74710.77

Read Depth Value
Min3
Average69.91288825896856
Max2478

Type Total Variants
None0
33
23

Chromossome Total Variants
17679
103163
114700
124252
131391
142611
152602
162948
173438
181144
193846
25167
201872
211135
221948
34280
43348
53547
64482
73833
82985
92957
X1449
Y12