Name: gatk_outputch_s2_dbsnp
Variants: 7859
Novel Variants: 1901 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 7859 30 1/2 1022 0/1 6807 1/1
Total Gene-associated SNVs 7859 30 1/2 1022 0/1 6807 1/1

Type Total Variants
54
CODON_DELETION1
FRAME_SHIFT8
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0059.1:Cmyc]1
MOTIF[MA0079.2:SP1]3
MOTIF[MA0083.1:Srf]1
MOTIF[MA0105.1:NFKB]1
MOTIF[MA0138.2:Nrsf]1
MOTIF[MA0139.1:CTCF]4
NON_SYNONYMOUS_CODING41
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION1
PROTEIN_INTERACTION_LOCUS1
SPLICE_SITE_REGION1
START_GAINED3
SYNONYMOUS_CODING48
None0

Type Total Variants
81
MISSENSE42
SILENT48
None0

Type Total Variants
HIGH9
LOW57
MODERATE43
MODIFIER62
None0

Type Total Variants
.7859

Quality Value
Min30.25
Average648.836995801029
Max115089.77

Read Depth Value
Min1
Average46.41442931670696
Max3993

Type Total Variants
None0

Chromossome Total Variants
1512
10578
11263
12269
13158
14162
15162
16476
17452
18372
19347
21024
20194
21112
22110
3383
4368
5302
6329
7376
8252
9345
M54
X111
Y148