Name: devrim_aydin
Variants: 84977
Novel Variants: 1291 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 84977 183 1/2 52713 0/1 32081 1/1
Total Gene-associated SNVs 84977 183 1/2 52713 0/1 32081 1/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION119
CODON_CHANGE_PLUS_CODON_INSERTION99
CODON_DELETION54
CODON_DELETION+SPLICE_SITE_REGION2
CODON_INSERTION75
CODON_INSERTION+SPLICE_SITE_REGION2
FRAME_SHIFT282
FRAME_SHIFT+SPLICE_SITE_REGION40
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+STOP_GAINED9
FRAME_SHIFT+STOP_LOST6
MOTIF_DELETED6
MOTIF[MA0003.1:Ap2alpha]18
MOTIF[MA0014.1:Pax5]2
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]2
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0058.1:Max]8
MOTIF[MA0059.1:Cmyc]2
MOTIF[MA0062.1:Gabp]5
MOTIF[MA0062.2:Gabp]14
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0079.1:SP1]1
MOTIF[MA0079.2:SP1]9
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]2
MOTIF[MA0093.1:USF1]3
MOTIF[MA0095.1:Yy1]4
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0099.2:AP1]2
MOTIF[MA0114.1:HNF4A]5
MOTIF[MA0138.2:Nrsf]3
MOTIF[MA0139.1:CTCF]57
MOTIF[MA0140.1:Tal1]2
MOTIF[MA0147.1:Cmyc]2
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]1
MOTIF[MA0162.1:Egr1]11
NON_SYNONYMOUS_CODING11028
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION249
NON_SYNONYMOUS_START1
PROTEIN_INTERACTION_LOCUS37
SPLICE_SITE_REGION33
SPLICE_SITE_REGION+SYNONYMOUS_CODING241
START_GAINED194
START_LOST10
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED96
STOP_GAINED+CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION3
STOP_LOST28
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING11721
SYNONYMOUS_STOP9
TRANSCRIPT2
None0

Type Total Variants
1126
MISSENSE11319
NONSENSE99
SILENT11971
None0

Type Total Variants
HIGH520
LOW12282
MODERATE11628
MODIFIER85
None0

Type Total Variants
PASS84977

Quality Value
Min10.15
Average1267.50254480561
Max57646.8

Read Depth Value
Min0
Average66.89857255492663
Max2753

Type Total Variants
None0
32
24

Chromossome Total Variants
18191
103582
115353
124577
131562
143028
152956
163836
174952
181372
195851
25704
202209
211276
222040
34594
43246
53518
65394
74360
82923
93300
X1060
Y93