Name: gulfidan_aydin
Variants: 83984
Novel Variants: 1354 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 83984 201 1/2 51838 0/1 31945 1/1
Total Gene-associated SNVs 83984 201 1/2 51838 0/1 31945 1/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION124
CODON_CHANGE_PLUS_CODON_INSERTION99
CODON_DELETION56
CODON_DELETION+SPLICE_SITE_REGION2
CODON_INSERTION75
CODON_INSERTION+SPLICE_SITE_REGION1
FRAME_SHIFT254
FRAME_SHIFT+SPLICE_SITE_REGION45
FRAME_SHIFT+START_LOST3
FRAME_SHIFT+START_LOST+SPLICE_SITE_REGION1
FRAME_SHIFT+STOP_GAINED6
FRAME_SHIFT+STOP_LOST4
MOTIF_DELETED3
MOTIF[MA0003.1:Ap2alpha]14
MOTIF[MA0014.1:Pax5]3
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]2
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]2
MOTIF[MA0058.1:Max]7
MOTIF[MA0059.1:Cmyc]2
MOTIF[MA0062.1:Gabp]5
MOTIF[MA0062.2:Gabp]10
MOTIF[MA0079.1:SP1]1
MOTIF[MA0079.2:SP1]17
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]1
MOTIF[MA0093.1:USF1]3
MOTIF[MA0095.1:Yy1]5
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0099.2:AP1]2
MOTIF[MA0114.1:HNF4A]2
MOTIF[MA0138.2:Nrsf]6
MOTIF[MA0139.1:CTCF]50
MOTIF[MA0147.1:Cmyc]4
MOTIF[MA0154.1:EBF]1
MOTIF[MA0162.1:Egr1]17
NON_SYNONYMOUS_CODING10872
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION237
PROTEIN_INTERACTION_LOCUS48
SPLICE_SITE_REGION29
SPLICE_SITE_REGION+SYNONYMOUS_CODING236
START_GAINED192
START_LOST11
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
START_LOST+CODON_DELETION1
STOP_GAINED109
STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST24
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING11717
SYNONYMOUS_STOP10
TRANSCRIPT3
None0

Type Total Variants
1107
MISSENSE11147
NONSENSE110
SILENT11963
None0

Type Total Variants
HIGH512
LOW12265
MODERATE11466
MODIFIER84
None0

Type Total Variants
PASS83984

Quality Value
Min10.15
Average1225.89687833347
Max60069.8

Read Depth Value
Min0
Average65.930320060964
Max2325

Type Total Variants
None0
31
24

Chromossome Total Variants
18174
103567
115323
124496
131518
142762
152802
163749
175034
181414
195842
25784
202111
211271
221991
34353
43352
53435
64908
74428
82917
93361
X1350
Y42