Name: yagmur_aydin
Variants: 85739
Novel Variants: 1316 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 85739 206 1/2 53540 0/1 31993 1/1
Total Gene-associated SNVs 85739 206 1/2 53540 0/1 31993 1/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION129
CODON_CHANGE_PLUS_CODON_INSERTION106
CODON_DELETION55
CODON_DELETION+SPLICE_SITE_REGION2
CODON_INSERTION72
CODON_INSERTION+SPLICE_SITE_REGION1
FRAME_SHIFT266
FRAME_SHIFT+SPLICE_SITE_REGION43
FRAME_SHIFT+START_LOST3
FRAME_SHIFT+STOP_GAINED8
FRAME_SHIFT+STOP_LOST3
MOTIF_DELETED1
MOTIF[MA0003.1:Ap2alpha]16
MOTIF[MA0014.1:Pax5]3
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0024.1:E2F1]1
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0058.1:Max]8
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.1:Gabp]7
MOTIF[MA0062.2:Gabp]13
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]1
MOTIF[MA0079.2:SP1]12
MOTIF[MA0080.2:PU1]1
MOTIF[MA0093.1:USF1]4
MOTIF[MA0095.1:Yy1]5
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0099.2:AP1]2
MOTIF[MA0114.1:HNF4A]2
MOTIF[MA0138.2:Nrsf]5
MOTIF[MA0139.1:CTCF]63
MOTIF[MA0140.1:Tal1]2
MOTIF[MA0147.1:Cmyc]3
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]2
MOTIF[MA0162.1:Egr1]12
NON_SYNONYMOUS_CODING10969
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION255
NON_SYNONYMOUS_START1
PROTEIN_INTERACTION_LOCUS40
SPLICE_SITE_REGION32
SPLICE_SITE_REGION+SYNONYMOUS_CODING237
START_GAINED193
START_LOST10
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED104
STOP_GAINED+CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION2
STOP_LOST29
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING11720
SYNONYMOUS_STOP13
TRANSCRIPT2
None0

Type Total Variants
1129
MISSENSE11267
NONSENSE106
SILENT11970
None0

Type Total Variants
HIGH513
LOW12269
MODERATE11589
MODIFIER101
None0

Type Total Variants
PASS85739

Quality Value
Min10.15
Average1415.38280572342
Max54830.8

Read Depth Value
Min0
Average74.72851327867131
Max2388

Type Total Variants
None0
32
22

Chromossome Total Variants
18292
103650
115472
124496
131565
143055
152900
163986
175058
181416
195962
25901
202173
211232
221972
34503
43458
53447
65061
74370
82936
93380
X1391
Y63