Name: 62415576_s68 mvar 62415576_S68.GATK
Variants: 82496
Novel Variants: 8236 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 82496 112 1/2 49973 0/1 32379 1/1 32 2/1
Total Gene-associated SNVs 82496 112 1/2 49973 0/1 32379 1/1 32 2/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION81
CODON_CHANGE_PLUS_CODON_INSERTION62
CODON_DELETION123
CODON_DELETION+SPLICE_SITE_REGION2
CODON_INSERTION104
FRAME_SHIFT274
FRAME_SHIFT+SPLICE_SITE_REGION46
FRAME_SHIFT+START_LOST1
FRAME_SHIFT+STOP_GAINED5
FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION2
FRAME_SHIFT+STOP_LOST4
MOTIF_DELETED5
MOTIF[MA0003.1:Ap2alpha]14
MOTIF[MA0014.1:Pax5]2
MOTIF[MA0016.1:RXRA]3
MOTIF[MA0024.1:E2F1]2
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0058.1:Max]7
MOTIF[MA0059.1:Cmyc]1
MOTIF[MA0062.1:Gabp]3
MOTIF[MA0062.2:Gabp]17
MOTIF[MA0065.2:PPARG]2
MOTIF[MA0079.1:SP1]2
MOTIF[MA0079.2:SP1]10
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]3
MOTIF[MA0093.1:USF1]2
MOTIF[MA0095.1:Yy1]6
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]3
MOTIF[MA0138.2:Nrsf]5
MOTIF[MA0139.1:CTCF]56
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]2
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0162.1:Egr1]14
NON_SYNONYMOUS_CODING10915
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION238
NON_SYNONYMOUS_START1
PROTEIN_INTERACTION_LOCUS43
SPLICE_SITE_REGION18
SPLICE_SITE_REGION+SYNONYMOUS_CODING244
START_GAINED196
START_LOST18
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
START_LOST+CODON_DELETION1
STOP_GAINED96
STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED+CODON_INSERTION1
STOP_GAINED+CODON_INSERTION+SPLICE_SITE_REGION1
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST26
STOP_LOST+CODON_DELETION1
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING11521
SYNONYMOUS_STOP15
TRANSCRIPT3
None0

Type Total Variants
1134
MISSENSE11200
NONSENSE97
SILENT11780
None0

Type Total Variants
HIGH524
LOW12074
MODERATE11525
MODIFIER88
None0

Type Total Variants
PASS82496

Quality Value
Min10.15
Average1044.06794535504
Max39722.8

Read Depth Value
Min0
Average57.302475271528316
Max1782

Type Total Variants
None0
31
24
2|22

Chromossome Total Variants
17779
103373
115242
124331
131421
142731
152754
163938
174709
181413
195839
25437
202113
211234
222124
34573
43096
53656
65011
74311
82815
93175
X1359
Y62