Name: 62415576_s68 mvar 62415576_S68.SAMTOOLS
Variants: 84820
Novel Variants: 8094 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 84820 8 0/3 62 0/2 51659 0/1 32985 1/1 88 2/2 18 3/3
Total Gene-associated SNVs 84820 8 0/3 62 0/2 51659 0/1 32985 1/1 88 2/2 18 3/3

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION75
CODON_CHANGE_PLUS_CODON_INSERTION83
CODON_CHANGE_PLUS_CODON_INSERTION+SPLICE_SITE_REGION1
CODON_DELETION132
CODON_DELETION+SPLICE_SITE_REGION2
CODON_INSERTION165
FRAME_SHIFT177
FRAME_SHIFT+NON_SYNONYMOUS_CODING1
FRAME_SHIFT+SPLICE_SITE_REGION49
FRAME_SHIFT+START_LOST3
FRAME_SHIFT+STOP_GAINED3
FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION2
FRAME_SHIFT+STOP_LOST3
MOTIF_DELETED1
MOTIF[MA0003.1:Ap2alpha]18
MOTIF[MA0014.1:Pax5]1
MOTIF[MA0016.1:RXRA]3
MOTIF[MA0024.1:E2F1]2
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0058.1:Max]7
MOTIF[MA0059.1:Cmyc]1
MOTIF[MA0062.1:Gabp]3
MOTIF[MA0062.2:Gabp]19
MOTIF[MA0065.2:PPARG]2
MOTIF[MA0079.1:SP1]3
MOTIF[MA0079.2:SP1]11
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]3
MOTIF[MA0093.1:USF1]2
MOTIF[MA0095.1:Yy1]6
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]3
MOTIF[MA0138.2:Nrsf]5
MOTIF[MA0139.1:CTCF]62
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]2
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0162.1:Egr1]17
NON_SYNONYMOUS_CODING11728
NON_SYNONYMOUS_CODING+CODON_CHANGE_PLUS_CODON_DELETION1
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION262
NON_SYNONYMOUS_START1
PROTEIN_INTERACTION_LOCUS41
SPLICE_SITE_REGION19
SPLICE_SITE_REGION+SYNONYMOUS_CODING248
START_GAINED205
START_LOST19
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION3
START_LOST+CODON_DELETION2
START_LOST+SPLICE_SITE_REGION1
STOP_GAINED111
STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED+CODON_INSERTION5
STOP_GAINED+CODON_INSERTION+SPLICE_SITE_REGION1
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST26
STOP_LOST+CODON_DELETION1
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING11946
SYNONYMOUS_STOP17
TRANSCRIPT3
None0

Type Total Variants
1154
MISSENSE12039
NONSENSE112
SILENT12211
None0

Type Total Variants
HIGH452
LOW12519
MODERATE12449
MODIFIER96
None0

Type Total Variants
PASS84820

Quality Value
Min10.04
Average1018.27445107297
Max43230.8

Read Depth Value
Min1
Average46.34626267389766
Max1793

Type Total Variants
None0
31
24
2|22

Chromossome Total Variants
18083
103452
115298
124397
131427
142763
152914
164050
174862
181440
196126
25561
202146
211268
222287
34649
43079
53699
65088
74554
82887
93323
X1368
Y99